Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01401 ATGGGTAGAACTCCTTGTTGTGACAAAGAGCACAAGTCCAAGGGAGCTTGGTCCAGAGAGGAAGACGAACTCCTCATCAACTACATCAAACTTCATGGAGAAGGAAACTGGAGATCCCTTCCCAAACCAGCAGGGAACTTCACGAAAGAAGAAACTGATCAGATCATTCACCTTCACAGCTTACTTGGAAACAAATGGTCTCAAATAGCTACAAGATTACCCGGAAGAACAGACAATGAGATCAAGAACTACTGGAACTCCCATCTGAAGGGTTACCTTTATGCCATTGGAATCGACCCAGTAACCCATCAAACCACCACAACTCAACCTGCTAATTCTCATGTCACCACCCATAGTACCCCCCAAATCTATTATTTTAATGTCTTTCTCAACTCAAAGTTGCAAATTAGCACTCATGATGGTCAAGTTTCAGATTGCAACATCACAGAGGAATCTCCTCCTCAACTCAACTTGAACCTTTCCATGGCGCCACCTTCTCAGCCTCAAGATGCTCCCATTGCTGAACGGCAAGAGCATGTTTTGTCAACAAAGAATTAG 558 0.4391 MGRTPCCDKEHKSKGAWSREEDELLINYIKLHGEGNWRSLPKPAGNFTKEETDQIIHLHSLLGNKWSQIATRLPGRTDNEIKNYWNSHLKGYLYAIGIDPVTHQTTTTQPANSHVTTHSTPQIYYFNVFLNSKLQISTHDGQVSDCNITEESPPQLNLNLSMAPPSQPQDAPIAERQEHVLSTKN 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01401 185 Gene3D - 46 90 - -
Pste3g01401 185 MobiDBLite consensus disorder prediction 163 185 - -
Pste3g01401 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 93 IPR017930 -
Pste3g01401 185 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 45 - -
Pste3g01401 185 ProSiteProfiles Myb-like domain profile. 9 89 IPR001005 -
Pste3g01401 185 SUPERFAMILY Homeodomain-like 12 85 IPR009057 -
Pste3g01401 185 SMART sant 13 91 IPR001005 -
Pste3g01401 185 Pfam Myb-like DNA-binding domain 45 89 IPR001005 -
Pste3g01401 185 Pfam Myb-like DNA-binding domain 14 40 IPR001005 -
Pste3g01401 185 CDD SANT 46 89 IPR001005 -
Pste3g01401 185 FunFam MYB transcription factor 45 106 - -
Pste3g01401 185 Gene3D - 7 44 - -
Pste3g01401 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 39 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01401 Pste-Chr3 8680533 8682905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01401 1 169 MYB Transcription Factor Family AT4G34990 45.588 5.49e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste3g01401 Myb_DNA-binding 2e-14 CL0123