Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01397 ATGGGCCGGGTTGGGTATGGTGGCCCTTTAGGTTTAATGAAACCTGGTTTATATTCCTCTCCGTGTCTTGCAAACAGCAGCACCTTCTTCTTCCTTTCATCTGTGTCTTCTGTGTCTGCAATGGCGGCGGCGTACGGTGCTATGAAACCCACCAAACCCGGTTTGGAGGAGTCTCAAGAACAGATTCACAAGATCAGAATCACCCTTTCCTCCAAGCACGTCAAAAATCTCGAAAAGGTTTGTGCTGACTTAGTTCGTGGTGCCAAGGATAAGCGCCTCAGGGTCAAGGGACCTGTCAGGATGCCCACTAAAGTTCTTCTCATCACTACAAGAAAATCCCCTTGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTCCGTGTGCACAAGAGAGTTATTGATCTCTACAGTTCCCCAGATGTGGTTAAGCAGATTACCTCAATCACGATTGAACCTGGTGTGGAGGTTGAGGTGACCATTGCAGACGCATAATCTTGATCCAAATTTTGAAAGCTTTGCTTCTTTGTTTTTTTTTTCTCATGTTTTTTGTAAGTTTTGATTGCGGGACTGAGTTGGTTTATTTTCTCTAGTTTTACGATTGTAGACATTGATGAATACCTTAGAAAGGCATCTTGATATATTCAAGAATCTTACATATATTTGTTTTGAAATTATTACAAATTATGTTACTAAGTGAATAGGGATGACAAATAAACATGTACTCGTGGATAATTCCCTAACCCGTTTCGAAGTTGACCGAG 764 0.4202 MGRVGYGGPLGLMKPGLYSSPCLANSSTFFFLSSVSSVSAMAAAYGAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01397 164 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 43 163 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pste3g01397 164 SUPERFAMILY Ribosomal protein S10 64 161 IPR036838 -
Pste3g01397 164 ProSitePatterns Ribosomal protein S10 signature. 88 103 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste3g01397 164 SMART Ribosomal_S10_2 66 160 IPR027486 -
Pste3g01397 164 FunFam 40S ribosomal protein S20 49 163 - -
Pste3g01397 164 Pfam Ribosomal protein S10p/S20e 66 160 IPR027486 -
Pste3g01397 164 Hamap 30S ribosomal protein S10 [rpsJ]. 62 161 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pste3g01397 164 Gene3D Ribosomal protein S10 domain 49 163 IPR036838 -
Pste3g01397 164 PRINTS Ribosomal protein S10 family signature 64 77 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pste3g01397 164 PRINTS Ribosomal protein S10 family signature 99 114 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pste3g01397 164 PRINTS Ribosomal protein S10 family signature 121 135 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pste3g01397 164 NCBIfam 30S ribosomal protein S10 63 161 IPR005729 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01397 Pste-Chr3 8658099 8660162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01397 41 164 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 89.516 6.90e-78 226