Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01375 GAAAAGTCGTGTTTGATAAATCGGATGCGACGCGATTTGTGCCTGTTCTCTGAACCGTGAAGTAAACCACATTATCTCTGTTTCTTTCTCCATCTTGTGCTTTTCTTTATTTCTTATTCACCTTTGATTTTTATTGAATCGAGTGAAAGGGTTATTCTTGAAAACTTGAAACCCTAACCTAACCTAACCATGGCGCATCGGTTACTGAGAGACCACGAAGCCGATGGTTGGGAGCGCTCCGATTTCCCTATCATCTGCGAATCCTGCCTTGGCGACAGCCCCTACGTTCGAATGTTCAGTAGAATCCTAACCATTTGTCAAATTGCTTCTTCTTATGTTTTGCCTTGCATGCAGACTAGAGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCTTTCACTGTTTTTAGATGGAGACCTGGGAGAGATGCAAGATATAAGAAAACTGAGATCTGTCAGACATGTAGTAAATTAAAAAATGTCTGTCAAGTATGCCTTCTGGATCTTGAATATGGACTACCAGTTCAAGTTCGAGACACAGCTCTCAGTATTGATTCCAATGATGCTATTCCAAAGAGTGATGTTAACCGGGAGTATTTTGCTGAAGAGCACGACCGCAAGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACCATCCTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGAGCACATATTTGCAGTTTTTACTTAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATAGACACGAGATGCCAGTAACTGGGGAATTGTCTCAACAGAATATCAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCTTTGAAGCTACTTGGAAAGGCAGGAGAGATGACTACCCTGGAAGCTCCGGAGGATGAGAGCATTAAAACACTTTATGTTGGTGGACTTGATGCTAGGGTCAATGAGCAAGATTTGCGAGACCACTTTTATGCCCATGGAGAAATTGAATCTGTCAAAATGGTTCTCCAGAGGGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCTGAAAAGGCAGCAGAAGAGCTCTCCAACAAACTGGTTATTAAGGGCCTAAGACTAAAGCTGATGTGGGGAAGGCCTCAGACATCGAAACCTGAGGTGGATGGCTCTGATCAAGCAAGGCAGCAAGCATCTGTGGCTCATAGTGGATTGTTACCTAGAGCAGTTATATCACAGCAGCAGCAGAACCAGGACCAAACCCAAGGAATGACTTACTATAATAATCCACCACCTCTTCAGCAGGACAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTGTTCCATCCCAAGATGGTCCTCCGGGTGGACCTTCTGGGTCAGGGGAGAACAAGCCCAATTTGGAGAAGCAGCAAATGCAACATTATCCCCATCCAATGATGCCTCCACCCGGTCAATACCATCATCAGTATTATCCACCGTATGGTTATATGCCACCAGCCCCTCCTTATCATCAATACCCATCTCCATACAATGCTGCAGTTGCTCCATCCCAGCCACAAGCTGCAAATCATCCTTATCAGCATTCTATGCAGCATGGTTCTTCACAGACAGGATCTTCGCAGGCTGTATCTGCCCCCGCCGAAACTGGAACATCAACATCAGGATCACAGCAGCAATAAAATTGCCCATGCACCGATGTTTCTAGTTATGTTTAATTATTGTTCAAAGTTTTTTCTTAAACTGACCATGCTGACAGGGAATTTTCACTCAAGCTGTCAATTTACTGTATCTGCAAGCTCGATATTGATTACCTCATGGCTTGAACAAGTTATGATTTGATTTTGTGCTTTTGTAACTCATGGCTTCCTGGTTAGAGATCATAGTAATGTTCAGCTTAGTTGTACTATGCATTGAGTTCTGATAGTACAACTTACGTTTTGGTTTTTGGTTATATAGCTTTTGTTCGGTAAAGATGGCCAATTGACTTGATATACATCAAATAATTCGTAAAGAATGTAGAT 2046 0.4296 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMFSRILTICQIASSYVLPCMQTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYLRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTTLEAPEDESIKTLYVGGLDARVNEQDLRDHFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPEVDGSDQARQQASVAHSGLLPRAVISQQQQNQDQTQGMTYYNNPPPLQQDRSYYPSMDPQRMGALVPSQDGPPGGPSGSGENKPNLEKQQMQHYPHPMMPPPGQYHHQYYPPYGYMPPAPPYHQYPSPYNAAVAPSQPQAANHPYQHSMQHGSSQTGSSQAVSAPAETGTSTSGSQQQ 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01375 504 SUPERFAMILY RNA-binding domain, RBD 242 328 IPR035979 GO:0003676
Pste3g01375 504 Pfam Torus domain 164 214 IPR032297 -
Pste3g01375 504 CDD RRM_RBM22 247 320 - -
Pste3g01375 504 Gene3D - 232 329 IPR012677 -
Pste3g01375 504 MobiDBLite consensus disorder prediction 454 504 - -
Pste3g01375 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 308 IPR000504 GO:0003723
Pste3g01375 504 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 398 IPR039171 GO:0003723
Pste3g01375 504 SUPERFAMILY CCCH zinc finger 179 202 IPR036855 GO:0046872
Pste3g01375 504 MobiDBLite consensus disorder prediction 456 504 - -
Pste3g01375 504 FunFam Zinc finger CCCH domain-containing protein 4 169 228 - -
Pste3g01375 504 ProSiteProfiles Zinc finger C3H1-type profile. 177 204 IPR000571 GO:0046872
Pste3g01375 504 MobiDBLite consensus disorder prediction 348 381 - -
Pste3g01375 504 MobiDBLite consensus disorder prediction 321 411 - -
Pste3g01375 504 SMART c3hfinal6 177 203 IPR000571 GO:0046872
Pste3g01375 504 MobiDBLite consensus disorder prediction 326 340 - -
Pste3g01375 504 FunFam Zinc finger CCCH domain-containing protein 40 233 329 - -
Pste3g01375 504 SMART rrm1_1 249 317 IPR000504 GO:0003723
Pste3g01375 504 Gene3D - 169 230 - -
Pste3g01375 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 321 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01375 Pste-Chr3 8543711 8548642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01375 235 309 Eukaryotic Initiation Factors Gene Family AT1G49760 32.500 1.89e-06 48.5