Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01324 TAAACGTTGTAAGGAAGAATGTGAAGACTTATGTTCCCTTTGTTGGATGATTGAAAAACCCTAGCTAGCCATTGATGGAAGTGAGAGAGGAAGATCGAAAACATGGAAAGAGGGCAGTTCCTTTGGAAGAAGAGAAAGCGTTTCCGATGTATTCTTATCGCTCCCACCAAGACACGTTGGCTGTTGTATCTGCTCTCGTTCAAGTCATCGGTGGCAATCCTGTTCCTGTCCACAACTCCACTGCTCTACATCTTTCCAATCAACCACCTCCACCCCTTCATGGAAAGTATAGAGGAGTGAGACAGCGACCTTGGGGGAAGTGGGCCGCAGAGATTAGCGACCCAAAAAAAGCAGCCAGAGTTTGGCTCGGAACTTTTCACACTGCCGAGGCTGCTGCTCTCGCTTACGATCAAGCCGCTCTCAGATTCAAAGGAACCAAAGCTAAGCTCAATTTCCCCGAACGAGTTCCTCTCTCTCTCTCTCCCTCTCCCTCTCCTAAGAAATTCAAATCTCTTTTCGATCACCATATTCAAAACTAGCTTCCTTCTTCATCCGCTACCCTATATATATTTCTTCTGTATTCCTCATTATGTGTCTTACTTTGTCGCTTTCTATTAAACTAAATATGCCC 631 0.4532 MEVREEDRKHGKRAVPLEEEKAFPMYSYRSHQDTLAVVSALVQVIGGNPVPVHNSTALHLSNQPPPPLHGKYRGVRQRPWGKWAAEISDPKKAARVWLGTFHTAEAAALAYDQAALRFKGTKAKLNFPERVPLSLSPSPSPKKFKSLFDHHIQN 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01324 154 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Pste3g01324 154 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Pste3g01324 154 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Pste3g01324 154 MobiDBLite consensus disorder prediction 135 154 - -
Pste3g01324 154 PANTHER DNA-BINDING DOMAIN 43 132 IPR044808 GO:0003700|GO:0009873
Pste3g01324 154 CDD AP2 71 129 IPR001471 GO:0003700|GO:0006355
Pste3g01324 154 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Pste3g01324 154 FunFam Ethylene-responsive transcription factor 2 71 129 - -
Pste3g01324 154 Gene3D AP2/ERF domain 70 130 IPR036955 GO:0003700|GO:0006355
Pste3g01324 154 Pfam AP2 domain 71 120 IPR001471 GO:0003700|GO:0006355
Pste3g01324 154 SUPERFAMILY DNA-binding domain 71 129 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01324 Pste-Chr3 8275559 8278199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01324 23 133 AP2-EREBP Transcription Factor Family AT5G61890 56.923 5.64e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste3g01324 AP2 2.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01324 3 8275559 8278199 Pste3g01324 3 8275559 8278199 ECH
Pste3g01324 3 8275559 8278199 Pste2g00225 2 1282192 1284212 ECH
Pste3g01324 3 8275559 8278199 Pste5g00451 5 2948709 2961214 ECH
Pste3g01324 3 8275559 8278199 Pste2g00225 2 1282192 1284212 PCT