Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01303 TAATTAAAGCCAACAAACACACTTTTTCTCTCTCCTTCTTTCTTTTCTTCTTCTTCTTTCTTTGAGTCACAAGTCACAAAACTCTGTTCTTCGCTTGTCTGATTCTCTCTGAACCACTCAGCTTACCGGCGAGCTTAATCTCGCCGGAATTTTTTCCCTTCGCTGGCCGGAATCCCTAACTTTTCCGATTTTAGCTCCCAATTCTGATTATTTTTGCCAGTGGTTGGGTCTTTAGAAACAACCAAAAATTTAAAAGCAACTGTTTTTCTTCATTTTATCCTCGGGTCGGATTGCAGGGAAAGCAATGCAGAGATAGGAGATGATATTTTTGAAAAAAAATCACGAGATCCCCTCTTTCTGAATTCCTTATGTTTTAGACCTCCTGCAAGATTCAATTTTTTTTCTTTTCTCTTTAGTTCCCTTCAAAATTTTCCTCTGAGAAGGTGGCTGAATTTTTTAAGGAACACAGATTTTGGGGTTTTTTTGCTGGAGGGATGTGTTTGAATTGAGGATGAGTAGAGTCCAAGGAAGCTAGCAAGTGGAGGTTTTGCAGCGATATTACTCTTTTTTCCAGATTCTCTGGGTTATAAGGTTGCAGGATGCCTTTTCAAATCATGGATCAGAGGGGTGTTTCAGCTTCATCCCACTTTTTTGATGACATTTCCTTTCCATCTGAGAGAAATGTTGGATTACGGAAACCAAAATCCATTAATGATCATTACCCACAAGGAAACAATGGAATGGTAGCATCACCTGGCAGCATTTTGAACGCCACACCACCTCTTGATGTAAATGCAAAAGCTGGACTGCTGATGTCGCAGGCTAGTCTGCCTGGTGACAATATAGATTCCAAGGAATCATTGAATTATCGTCCCAAATCATTGTCTGATGCATCTCTGCCGGCAGCACCCATCTCATATGGTTTAATTGGGAACAAGATTGTGACAAATGCTGCCCCTTGTGAAAGTAGTTTATTCTCAAGCTCCATGTCTGAGATATTTAGCCAAAAGTTAAGGTTATTTGGGAATGATGTTCCATCTGATCAGCCCATTACTGCTGGTTTTCCTCTTGAAGAAGAACCATATAAATCACTTGAAGAAATGGAGGCTGACACTATAGGAAATCTCCTTCCCGATGAAGATGATTTATTTTCTGGTGTTGTTGATGAGTTAGGATGCAGTTCTCATACCAGAACAAATGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAAATGGAAGGAGATGAACATTTGAGTTCAGGAAAAAGAATTGGTGGTCTCGATGGAGATTATGGCTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACCCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACAATTTATACAGCCTGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGACCTAAGGGCTGCACAAAAGGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCCAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAAAAGGATATAGGCCATGGTACACTGATGCTATCTGGTCTTGATTCATCCGTTTTAAATGATGAGCTTAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGACATCTATGAATATCAAGAAATGAATCATCACAAATTTATAGAGTTTTATGATGTCCGAGCTGCGGAATCTGCTCTTCGTGCACTGAACAAGATTGACATTGCTGGGAAGCAGATGAAGCTTGAACCTGGCCATCCTAGTTTGATGCACCAGTCTTATAAGGGGCAAGATGAGCGAGACCTTGGTCAAAGTATTATTGACAACTTATCATTAAGACAAAAAGCGTCTGCTGGAGTTATTGGATCTGGATGCTTGGAAAATGAATATAATCAGAGATTTCAATCAACAGTGAGACAACCTTTGAATGGATTTATTGATAATGCATTCATTCATGCAAATTCTGGAATTCACAACACTGTGAGAGGGGCATCTGGTGGAAAAGTGTCTGGTGTTTGTGAGTCAAGTAGCTTTGTTGATGCAATGAAATTTGCTTCTAGTTCAAGATTTCATCCTCATTCCTTACCTGAGTATCGTGATAGTTTGGCTAATGGCAGTCCTTATAACTTTTCTAGCACCATTAGCAACATGGCTAACAATATAGGTGCTGGAGCATCCGAAGCCTCTGATGGCAGACATATTCAGGGAATGAGCTCCTCTGGGAACTTAGCAGAATTTAATGCAGGAGGAAATGGGATACGGCCACATCATGGACTTTATCATATGTGGAACAGCTCCAATGTGCAGCAACCTTCATCGAGTACCATGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTGTTCTCCGAGCCTTCCGCAGATGTCAAGCTTTGCTAGAACACCACCTCATATGCTGAGAACACCACATATGATGGACCATCATGTTGGATCAGCACCTGTTGTTACAGGCTCACCATGGGAAAGACAAAGTTCTTACTTGGGAGGGTCCCCAGAGGCTTCCGGTTTTCGCTTGGGTTCTGTAGGAAGTGGAAGTTTTCATGGTTCCTGGCAATTGCATCCACTGGATTTCCCTTCTCACAGTGTGTTTTCTCATGTTGGTGGAAATGGCACTGAATTGTCATCCAATGCTGGACAGAATTCTCCCAAGCAGTTGTCACATGTTTTCCCTATGAGACATCCTATATCTTCAATGTCAAAATTTGATACTACCAATGAACGGATGAGAAACCTTTATCACCGTAGAAATGAAGCAAGCACCAATAATGTTGATAAAAAACAATATGAACTTGACTTGGGTCGCATATTGCATGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAGTATACTTCCAAAATGCTTCTTGCTGCCATAGATGAGCAGTGTAAGGGAACTTATGACTTTCTGTATTTACCTATTGATTTCAAGAACAAATGTAATGTTGGCTATGCTTTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAGGCTTTTGATGGGAAAAAATGGGAGAAATTTAATAGTGAAAAAGTAGCCTCACTTGCCTATGCACGAATTCAAGGAAAAGCTTCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAACGAAGACAAACGTTGCCGTCCTATCCTCTTCCATACAGATGGCCCAAATGCCGGTGATCCGGAGCCTTTCCCGATGGGTGCCAACATTAGACTGAGACCCGGAAAATGTCGCACTGCTGGCAATGAGGAGAATCGAAGCCAAGGGAGTCCTTCAACTTTTGCAAGTGGAGAAGAGTCTGCTAATGGGATAGACCCTTTAAAAAACTCTTAAACTGATTTAGCCTTCCTTGGGCACTAACTGTTCAATATTGCACCATAATCTCATGTCTGTATATTGACATTTTCTTTTGATGAGAGAGCCAGGAGGAAAAGGGGCTCATAATTTTTTGCCTATAGAGGAGCCTTAAACACAAGTTTTCTGAGGCTTTGGTACATAACCAGAATGAAGTCACTGATTGTAGTAATTTTTCTTTATTTCCTAATTTTTTGCATGGAGTCCTCCTACATTCTCACAAGTTTAGAGAATGGATTAACTGAAAGCTCAAAATTTTTGTTAGCTGTGAACAGATCATGTCACCCATTTGCATTAAGTTCCCTTCACAATTGCCGGGTTCAACGGGACTTAATTGCGGATTTTGTTGTTCATTATTTTTGTACTGTTGTTCATATGTATCTTTTTTAATTTTAAAATTCGGGGCGATTGTGCCCTCATGGGATTAGTTTTTGTTTATAAAAGTGAATGTTGAGGAACATTTTAGGTTTACTTTATTATTTTGGATATTGTTCTTTCTCTTGCAATTGCAATCTCTGAAATTCTTGCAGCCTTACCAGTTATGTCTCAGCTCAGCCATCAATAGTGCTAACTCTGGGCACTTATTCTTTGTTTGGATCAGAAGAAGAAAACG 4074 0.3979 MPFQIMDQRGVSASSHFFDDISFPSERNVGLRKPKSINDHYPQGNNGMVASPGSILNATPPLDVNAKAGLLMSQASLPGDNIDSKESLNYRPKSLSDASLPAAPISYGLIGNKIVTNAAPCESSLFSSSMSEIFSQKLRLFGNDVPSDQPITAGFPLEEEPYKSLEEMEADTIGNLLPDEDDLFSGVVDELGCSSHTRTNDDFEDFDLFSSGGGMEMEGDEHLSSGKRIGGLDGDYGFFGGSKGKLPFVEQPSRTLFVRNINSNVEDPELKALFEQYGDIRTIYTACKHRGFVMISYHDLRAAQKAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKDIYEYQEMNHHKFIEFYDVRAAESALRALNKIDIAGKQMKLEPGHPSLMHQSYKGQDERDLGQSIIDNLSLRQKASAGVIGSGCLENEYNQRFQSTVRQPLNGFIDNAFIHANSGIHNTVRGASGGKVSGVCESSSFVDAMKFASSSRFHPHSLPEYRDSLANGSPYNFSSTISNMANNIGAGASEASDGRHIQGMSSSGNLAEFNAGGNGIRPHHGLYHMWNSSNVQQPSSSTMLWQKSPSFVNDACSPSLPQMSSFARTPPHMLRTPHMMDHHVGSAPVVTGSPWERQSSYLGGSPEASGFRLGSVGSGSFHGSWQLHPLDFPSHSVFSHVGGNGTELSSNAGQNSPKQLSHVFPMRHPISSMSKFDTTNERMRNLYHRRNEASTNNVDKKQYELDLGRILHGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRPGKCRTAGNEENRSQGSPSTFASGEESANGIDPLKNS 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01303 946 FunFam MEI2-like protein 5 isoform 2 243 337 - -
Pste3g01303 946 PANTHER RNA RECOGNITION MOTIF-CONTAINING 54 939 - -
Pste3g01303 946 CDD RRM1_MEI2_like 253 328 IPR034453 -
Pste3g01303 946 Gene3D - 248 337 IPR012677 -
Pste3g01303 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 327 IPR000504 GO:0003723
Pste3g01303 946 SUPERFAMILY RNA-binding domain, RBD 777 862 IPR035979 GO:0003676
Pste3g01303 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 412 IPR000504 GO:0003723
Pste3g01303 946 SUPERFAMILY RNA-binding domain, RBD 251 409 IPR035979 GO:0003676
Pste3g01303 946 SMART rrm1_1 777 853 IPR000504 GO:0003723
Pste3g01303 946 SMART rrm1_1 340 408 IPR000504 GO:0003723
Pste3g01303 946 SMART rrm1_1 255 323 IPR000504 GO:0003723
Pste3g01303 946 FunFam Protein MEI2-like 1 338 431 - -
Pste3g01303 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 320 IPR000504 GO:0003723
Pste3g01303 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 405 IPR000504 GO:0003723
Pste3g01303 946 MobiDBLite consensus disorder prediction 888 946 - -
Pste3g01303 946 Gene3D - 338 430 IPR012677 -
Pste3g01303 946 MobiDBLite consensus disorder prediction 917 946 - -
Pste3g01303 946 Pfam RNA recognition motif 2 775 871 IPR007201 -
Pste3g01303 946 CDD RRM3_MEI2_like 778 863 IPR034454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01303 Pste-Chr3 8184029 8192310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01303 251 403 Eukaryotic Initiation Factors Gene Family AT3G16380 25.862 7.40e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01303 3 8184029 8192310 Pste2g00234 2 1401112 1409547 PCT