Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01295 ATTCAAACAGAACACAAACATTGGACATTGGGTGTTGGTGTGAAGGTGTGGGAAATAGTGTCGTGGAGATCCGATTCATATTCATCAGTATCGGCATCAGCATCGGCATCAGCATCTTCATCATCACCAGAAGTGGTAGGTTCTGACATGGGTGAGTTGGAGATACTGCCCAGTGACATTTTGATGCAAATTTTGAGACTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGTGTGCAAGGCTTTGAGATCCCTTGTGGGTGATAACAGACTTTGGGTTCACTTTCTTCAAACCCATCAGGCTGATCCCTCCGGGGATTCTGTCTTTTTTGCTGAGACCAACTTGAGCTCTGGCTACCCTTTTTCGTGCTTTGTTTGCTTGGTTGACGCTGTGATGATTGATGACTTTAGCTATGGTGGCTGTTGCAGGTTCTTTGGTATTACGTGCTTTGTTTTCTGTGATGGGTTGTGCAATTCCCTAAATTACAGAGCCTCTGTTGGCCATTGGCCGCAGTTATCATTCAAGCATATATATGGCCAGAGAGCCCAAGTTCCTGGTTCTATTATCATTGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATATGCATGTCCATCAGGGCAATCAGCTACGAATTTGGTAACATTGAGTCACCAATGTATACTAGGCTTCGACAATTTTTTTCAACTATTTGTAACAGATACTGAATCAGCCAAAGCATCTAGACAACAGCTTAAAGAGGCAATTTATGCTTCCTTGTTTGACTTGAATGTTCCTGTTGTTTGTGCTGTCAACCAGGCCACTCTAGCTCTGTATGCTGCGAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACATCTATAGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACAGGATTTCATAGGGAGAGGATGCAACTGAATAACTTAAATTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAAGCTATGTTATGTTGCGCTTGATTATGAAGCTGAGCTATTGAAAGATACCAAAGCATCATTTCAAGCTGCGGGAGAAGGATTGTTTACCCTTTCAAAGGAGAGGTTTCAGACAGCAGAGGTTTTATTCCAGCCACATCTTGCTGGAGTGCAAGCTGTTGGTTTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGTCATTCTGCAGATTTAGCAGGTGACAGTGATTGGTACAAGACTATAGTCTTATCAGGGGGAACTGCATGCTTACCTGGTTTGGCTGAAAGGATAGACAAGGAACTCCATGCATTACTTCCTCCCTACATGTCCAATGGAATTAAAATCACACCTCCTCCATACGGTGCTGATACACCATGGTTTGGAGCAAAGATTATTGCCAATTTGAGCACCTTTCCTGGTCATTGGTGTGTGACAAAAAAGCAGTTCCGACAGAAGCCTAGACTCAACCTCATATGGTGATTTTTTTTGTACAAATTTTACTTTCCCAATTAAGCACCCTCCTATAAAAGGTCAAGAACAGAAGATGTGAATTTTAGCTACTGCTTATGTGCGTATAAATATTATGATTTCCTGGTAAGAAGCATATAATTAACGTTTAGCTCGTCAAGAATAAACCACTAGTGTGGAGAAACTGTTAATATAGTTTAAGAGCAAATCCATAGGGTGAGAGGTTGGTGTAATTTTTTTGTTTGATGAAAAGGTTTTGTGTAATTAAACAATTATAAAATGGTGGGATTGCAATCCATATCTAAGTGACACGTACCTTTTAAGAATGCCATAAGCTTCAAAGATGGCTTGCGCTAGAAATTTTAATTTTTCACCATGA 1879 0.4093 IQTEHKHWTLGVGVKVWEIVSWRSDSYSSVSASASASASSSSPEVVGSDMGELEILPSDILMQILRLLGPKEAAKLSVVCKALRSLVGDNRLWVHFLQTHQADPSGDSVFFAETNLSSGYPFSCFVCLVDAVMIDDFSYGGCCRFFGITCFVFCDGLCNSLNYRASVGHWPQLSFKHIYGQRAQVPGSIIIDGGSGYCKFGWSKYACPSGQSATNLVTLSHQCILGFDNFFQLFVTDTESAKASRQQLKEAIYASLFDLNVPVVCAVNQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFHRERMQLNNLNFQSLYTVRTLKEKLCYVALDYEAELLKDTKASFQAAGEGLFTLSKERFQTAEVLFQPHLAGVQAVGLHQAIALCVEHCHSADLAGDSDWYKTIVLSGGTACLPGLAERIDKELHALLPPYMSNGIKITPPPYGADTPWFGAKIIANLSTFPGHWCVTKKQFRQKPRLNLIW 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01295 503 Gene3D - 270 468 - -
Pste3g01295 503 Gene3D - 48 121 - -
Pste3g01295 503 CDD NBD_sugar-kinase_HSP70_actin 256 310 - -
Pste3g01295 503 SMART actin_3 186 493 IPR004000 -
Pste3g01295 503 Pfam Actin 238 493 IPR004000 -
Pste3g01295 503 SUPERFAMILY Actin-like ATPase domain 188 285 IPR043129 -
Pste3g01295 503 PANTHER ACTIN 244 495 IPR004000 -
Pste3g01295 503 SUPERFAMILY Actin-like ATPase domain 279 494 IPR043129 -
Pste3g01295 503 SUPERFAMILY F-box domain 48 104 IPR036047 GO:0005515
Pste3g01295 503 ProSiteProfiles F-box domain profile. 50 96 IPR001810 GO:0005515
Pste3g01295 503 Gene3D Actin; Chain A, domain 4 313 396 - -
Pste3g01295 503 Gene3D - 246 495 - -
Pste3g01295 503 SMART fbox_2 56 96 IPR001810 GO:0005515
Pste3g01295 503 Pfam F-box domain 56 94 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01295 Pste-Chr3 8141806 8150166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01295 240 495 Cytoskeleton Gene Families AT3G12110 34.848 1.55e-39 145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01295 3 8141806 8150166 Pste3g01295 3 8141806 8150166 ECH