Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01288 AACATTTCTGGAAAATGCGTTTCGCCAATCTCGATGACACTCCAATGTTCCGCCAACAGATACAGTGTTTGGAGGAAAGTGTTGAATCGTTGCGCGCCAGATGCTGCAAGTTCTATAAAGGATGTCGAAAGTATACGGAAGGTCTTGGAGAGGCATATAATGAGGACATCTCATTTGCAAATGCCATAGAAAATTTTGGAGGAGGACACAATGATCCTCATTTTGTTGCTCTGGGAGGACCTGTTATGGCCAAATTTACTACAGTGTTGAGAGAAATCAGTACATACAAGGATCTGCTCCGGTCACAAGTAGAGCACATTTTCAATGATCGCTTACTACCCATTGTCAGTGTCGACATCCAAGAAGTCAAGGAAGCTCGTAAGCGTTTTGATAAAGCTTCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGTCACTGAGAAAAAGCACTAAGATTGACATTGCCACTGTCATAGAAGAGGAATTGCAGGACGCAAGAGCATCATTCGAGGAAGCCCGTTTCAATCTGGTTGGTACTCTTAATGACATTGAGGTCAAGAAGAGATTCGAGTTTTTAGAGGCTGTAACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGGGATCAGCTTTTACATCAGATGGAACCTTTCATCAGCGAGATTATGGATTATGTACATCAGTCAAGAGAAAGCTACAATAACGAGCAGATTTCACTTTATAAAAGAATGCAAGACTACAAAAAACACGTTTATGAAGAAAGTAGGTTGTCCTTGAATGGTCCTTATGGTTCTCCTAATGGTGGAGACTCTGCACATCCATTTTCTAGGATATCAAATGAAGTAGCAGATGTAGTAATAGAATCCGCTGAAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTGCAAAACGATCCTCGAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTCTTGACAGTAGAGGAAAGTTGTACTACTACCGCAAACCATGGAGTGGGTCACAAAGCAGCTATCAACCATCTCCAAAGAAGAATAGTGGCAATGAAAATGGTTCTGGGATTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAAATCTGTTGCACGTCATACAGTAAACCTGCTGACATCAACAATCAAGGTTGATGCTGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCGCCATCAAAGAACTATACATTGCAGGCCGAAAATGCAGTGGACCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTAACTGTCCAGACACTGGGAATGCCTCTCTCAGCTGACTCAGAAAACGACGACTCTCACTCTGATGACAATATTGATAACTTAGACAGTTCTCTTGATGATGATCATGCTGTGACTGTGAACTCTGCATCCAAGAATACCACCTCTACTAGCCAGTTACGTGCATCAAGAAGTTTGCAGTTGTATAAACACAGTATGAGAATTGAAAAACCAATTGATGTTCTTAGAAGGGTGAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGCATTCTTATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGGTCACTGACACTTGATGTTAAAATTTGGGATCCGTCTGTTTTAAGTATGCTTAAGTCACTAGGAAATCTTTTTGCAAACTCAGTTTGGGAGGAGCTTCTGCATTCACCAAGTAACCTGCAAACTGTTGACACTCTTGCTAGTTCATCCAAGGAAAATGGAGAGGGACCTTTTCATGCAAGAAAACCAAAACATGATGATTCTATTTCATTAAAGGAAAGGTTCATTCATGCAAAGTATTCTGAGAAAATATTTATTCCCCGGACAAAGAAAAGCCACCCGTTCCTTTCATTGGCACAACTGTTGATGGAAAGCGTCTGTGCCAATGACACTAAAGCAGTGTACCAGCATATTGTGAAATCGCATGTTGACATCAATGCCATCGGTTGGCGAGCATTGTCTGATGACTCTTTCAACATGGCTTCTTCAAATAATTTAAACAATACATCTCAATGTGAAAATCAGCCCATTGAGGTCATACAAGATGGTTCTAGCATGCTTCACCTAGCATGCCTAACTAGTGACGTTAGCTTGGTGGAGCTGCTCATACAAAATGGGGCAAATATAAATGCTTGTGATTCTAGAGGTCGGACACCACTACATTATTGTATTATTACAGGGAAGACCGCAGCAGCAAAATTGCTTATCACGAGGGGAGCCAATACTTATGTCACTGATAAAGAAGGCAACACTCCTGTTAAGCTTGCATCCGAATCTGGCTGTAACTATATATATAAGTTCTTAAATGATTATTCATGTAAAAATTCCTTGAAGAAAAAGAAGAGACAAACAAAAAAGAAGAAAAGA 2477 0.4037 MRFANLDDTPMFRQQIQCLEESVESLRARCCKFYKGCRKYTEGLGEAYNEDISFANAIENFGGGHNDPHFVALGGPVMAKFTTVLREISTYKDLLRSQVEHIFNDRLLPIVSVDIQEVKEARKRFDKASLVYDQAREKFMSLRKSTKIDIATVIEEELQDARASFEEARFNLVGTLNDIEVKKRFEFLEAVTGIMDAHLRYFQQGDQLLHQMEPFISEIMDYVHQSRESYNNEQISLYKRMQDYKKHVYEESRLSLNGPYGSPNGGDSAHPFSRISNEVADVVIESAENGKVQIIRQGYLAKRSSNLRGDWKRRYFVLDSRGKLYYYRKPWSGSQSSYQPSPKKNSGNENGSGILSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIASLLTVQTLGMPLSADSENDDSHSDDNIDNLDSSLDDDHAVTVNSASKNTTSTSQLRASRSLQLYKHSMRIEKPIDVLRRVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKIWDPSVLSMLKSLGNLFANSVWEELLHSPSNLQTVDTLASSSKENGEGPFHARKPKHDDSISLKERFIHAKYSEKIFIPRTKKSHPFLSLAQLLMESVCANDTKAVYQHIVKSHVDINAIGWRALSDDSFNMASSNNLNNTSQCENQPIEVIQDGSSMLHLACLTSDVSLVELLIQNGANINACDSRGRTPLHYCIITGKTAAAKLLITRGANTYVTDKEGNTPVKLASESGCNYIYKFLNDYSCKNSLKKKKRQTKKKKR 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01288 821 SUPERFAMILY ArfGap/RecO-like zinc finger 499 639 IPR037278 -
Pste3g01288 821 Gene3D - 651 821 IPR036770 -
Pste3g01288 821 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Pste3g01288 821 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 646 - -
Pste3g01288 821 Pfam Putative GTPase activating protein for Arf 503 638 IPR001164 GO:0005096
Pste3g01288 821 CDD ArfGap 503 632 - -
Pste3g01288 821 CDD BAR_SFC_plant 15 215 IPR035670 -
Pste3g01288 821 ProSiteProfiles PH domain profile. 293 429 IPR001849 -
Pste3g01288 821 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 645 IPR001164 GO:0005096
Pste3g01288 821 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Pste3g01288 821 ProSiteProfiles Ankyrin repeat region circular profile. 747 779 - -
Pste3g01288 821 ProSiteProfiles Ankyrin repeat profile. 747 779 IPR002110 GO:0005515
Pste3g01288 821 Coils Coil 806 821 - -
Pste3g01288 821 CDD PH_ACAP 296 433 - -
Pste3g01288 821 PANTHER CENTAURIN/ARF 5 792 IPR045258 GO:0005096
Pste3g01288 821 SUPERFAMILY BAR/IMD domain-like 6 316 IPR027267 -
Pste3g01288 821 SMART PH_update 294 431 IPR001849 -
Pste3g01288 821 SMART ANK_2a 714 743 IPR002110 GO:0005515
Pste3g01288 821 SMART ANK_2a 780 811 IPR002110 GO:0005515
Pste3g01288 821 SMART ANK_2a 747 776 IPR002110 GO:0005515
Pste3g01288 821 SMART arf_gap_3 500 645 IPR001164 GO:0005096
Pste3g01288 821 MobiDBLite consensus disorder prediction 332 351 - -
Pste3g01288 821 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Pste3g01288 821 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Pste3g01288 821 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Pste3g01288 821 Gene3D Arf GTPase activating protein 480 646 IPR038508 -
Pste3g01288 821 ProSiteProfiles Ankyrin repeat profile. 714 746 IPR002110 GO:0005515
Pste3g01288 821 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Pste3g01288 821 Pfam Ankyrin repeats (3 copies) 719 805 IPR002110 GO:0005515
Pste3g01288 821 Pfam PH domain 295 428 IPR001849 -
Pste3g01288 821 Coils Coil 118 138 - -
Pste3g01288 821 SUPERFAMILY PH domain-like 204 428 - -
Pste3g01288 821 ProSiteProfiles Ankyrin repeat region circular profile. 714 745 - -
Pste3g01288 821 Gene3D - 285 437 IPR011993 -
Pste3g01288 821 SUPERFAMILY Ankyrin repeat 659 811 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01288 Pste-Chr3 8105557 8126642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01288 501 638 C2H2 Transcription Factor Family AT4G21160 40.000 1.13e-21 95.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01288 3 8105557 8126642 Pste3g01288 3 8105557 8126642 ECH
Pste3g01288 3 8105557 8126642 Pste2g00247 2 1535752 1543079 PCT