Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01281 AACTGTGTTATTGTTTGAATGTTTACATAGATTAAGATTTTAGGACCAAAGGGGTAGACATGAATGTGACAAATAAGCCAAACCCAGATGGTTCCACCAATGAGTTTCAGTCTCAACAACAACACATTGAAAGATCAAATGGGTGGGAGGGATCTTCTAAGCTCACACCCACCAAACCTTACCCTGCACCAACTGCTCGCTACCAGGACATTCTTCATGATGCAAACATCTTCTGGGCAGCGCTTCAAGCTTTTCACAATTCACTTGGCACCAAATACAAGGTTGCTACTGTGGGTGGAAAGTCACTTGATCTACATCACCTTTTTGTGGAAGTCACATCTCGTGGGGGGATTGAAAAGGTGATTGTTGATCGAAAATGGAAGGAAGTGATTCTGTCCTTCAATTTCAAAGATACCATAACGAGTGCATCATTTGTGGTCCGCAAATCCTATCTATCAATGCTTTATCACTTTGAGCAAGTAGGTCAATCAGGCCATCCCTGTAGCTCCACAACCGATTCAGAAGCTGCTGCTGTGAATGATTCACCTGTTCAGGGTAGTCCAGCACAGGCATGTGGTGCTATGATTTCTGGAACAATAGATGCAAAATTTGATGGTGGATATGTAGTTACAATGACTCTGGGTTCTGAGCAGCTGAAAGGTGTCTTGTTTCATGTTCCTGACAATGTGTCTCGGAGTTCTCATACCGAAGGCATGTCTAGTTCACAGAATGTTGGTGAAGGCACGTCTAGTTCACAGAGTCGAAAGAGAGCAAAATATGCACCACGTGATCCATTTCGGCCCAAGTCAAACAGGAGTGGTTACAACTTTTTCTTTGCTGAGAATTATGCTAGGCTGAAGCCCTCTTATCATGGGCAAGAGAGAGCAATAAGTAAGAGGATTGGGTTTCTGTGGAACAATCTGTCAGAAGCTGAAAGACAGGTTTATCAAGAAAAAGGGGTGCGAGACAAGGAAAGATACAGAACTGAACTGATGGAGTACAAATCCAATCATTCAACTCCAAATGCTCAATAGGCTGTTTTATGTAATCCTTAGACTGCCATTTACATGTTTCATCTTTGATTTGTCTTTGTTATAGTGAATTAGCATAGAAGCTTAGAAGATTAGCTGTGTGACAATTCTGGTGTAAATTATGCTGAATGATTTTAGTAAACATCTTGTAGCATTTCATTTATTGTAGTTACTAGTTACTCTAA 1216 0.4112 MNVTNKPNPDGSTNEFQSQQQHIERSNGWEGSSKLTPTKPYPAPTARYQDILHDANIFWAALQAFHNSLGTKYKVATVGGKSLDLHHLFVEVTSRGGIEKVIVDRKWKEVILSFNFKDTITSASFVVRKSYLSMLYHFEQVGQSGHPCSSTTDSEAAAVNDSPVQGSPAQACGAMISGTIDAKFDGGYVVTMTLGSEQLKGVLFHVPDNVSRSSHTEGMSSSQNVGEGTSSSQSRKRAKYAPRDPFRPKSNRSGYNFFFAENYARLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGVRDKERYRTELMEYKSNHSTPNAQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01281 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 19 321 - -
Pste3g01281 324 SUPERFAMILY ARID-like 52 141 IPR036431 GO:0003677
Pste3g01281 324 CDD HMG-box_AtHMGB9-like 248 314 - -
Pste3g01281 324 Pfam HMG (high mobility group) box 248 315 IPR009071 -
Pste3g01281 324 MobiDBLite consensus disorder prediction 1 34 - -
Pste3g01281 324 Pfam ARID/BRIGHT DNA binding domain 57 139 IPR001606 GO:0003677
Pste3g01281 324 MobiDBLite consensus disorder prediction 211 248 - -
Pste3g01281 324 Gene3D High mobility group box domain 230 323 IPR036910 -
Pste3g01281 324 SUPERFAMILY HMG-box 247 319 IPR036910 -
Pste3g01281 324 MobiDBLite consensus disorder prediction 211 236 - -
Pste3g01281 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 248 315 IPR009071 -
Pste3g01281 324 SMART ARID_2 49 139 - -
Pste3g01281 324 SMART bright_3 53 144 IPR001606 GO:0003677
Pste3g01281 324 ProSiteProfiles ARID domain profile. 52 143 IPR001606 GO:0003677
Pste3g01281 324 Gene3D - 46 157 IPR036431 GO:0003677
Pste3g01281 324 CDD ARID_HMGB9-like 54 139 IPR045303 GO:0003677
Pste3g01281 324 SMART hmgende2 247 316 IPR009071 -
Pste3g01281 324 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01281 Pste-Chr3 8069312 8074071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01281 20 320 ARID Transcription Factor Family AT3G13350 50.000 2.16e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pste3g01281 ARID 4.3e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01281 3 8069312 8074071 Pste3g01281 3 8069312 8074071 ECH