Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01276 GACCACTCTGGTTAAGTCTCCCCCCTCCGACACTGCTTCTGGGTGCTGCAATGCAAACCATTTATCAGCTGAGAGAGAAAAAAATAAAAATAAATTAAAAACTAAGATAGTAAGAGATAGAGAGAGAAATAAAGATAGATAGATAGATAGATAGAGTAGTTGATAGAGTCCATTGCAGGTAGAGAGAGGTTTTGGGAATTGCTGCTGCTTCCTGTCTGCTAGGTTTGAGAATTCCGGTACAGTCAAGAAAAACGAAGACTCCGATCTTGCGATGTGATTTATTAGAGATCTGTGAGCGGAATAAATGGCGACGTCGGAGGTATTGATCAAGGTGAACGGTAACGATGTCAGGAACGGTGGAGGAGAGGTCCAGAATGCTTCTTCTTCATCATCATCTTCCGCGAGAGACGCGGAAGCTGCCCTTTACAGGGAGCTCTGGCACGCGTGTGCAGGTCCTCTAGTGACTGTGCCTAGAGAAGGAGAGCGCGTGTTCTACTTTCCTCAAGGACATATTGAGCAGGTGGAAGCGTCCACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCCAAGATCCTTTGTCGGGTCATCAACGTCATGCTCAAGGCGGAGCCAGACACGGATGAGGTGTTTGCTCAAGTCACCTTACTTCCCGAGCCGAATCAAGATGAGAATGCTGTGGAGAAAGAGGGTCCTCCGGCTCCGCCTCCTCGGTTTCACGTGCATTCCTTTTGTAAAACGCTGACGGCGTCTGACACGAGTACTCACGGTGGGTTTTCGGTGCTGAGACGACATGCCGATGAATGCCTCCCTCCTCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCATGGGAACGAGTGGCGATTCCGGCATATTTTTCGGGGTCAACCGCGTAGACACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTTAGCTCCAAGAGGCTAGTTGCCGGAGACGCGTTCATTTTTTTAAGGGGTGAGAATGGGGAACTTCGGGTCGGTGTTAGGCGTGCTATGAGACAGCAGGGTAATGTTCCATCATCGGTTATCTCGAGCCATAGCATGCATCTCGGTGTTCTTGCAACTGCTTGGCATGCCATAATGACTGGAACCATGTTCACTGTGTATTACAAGCCTAGGACTAGTCCAGCTGAATTTATTGTTCCATATGAACAATACATGGAGTCTCTAAAAAACAATTATACCATTGGGATGCGGTTCAAGATGAGGTTCGAAGGTGAAGAGGCTCCCGAACAGAGGTTTACTGGAACAATTGTTGGAATTGAAGATGCTGATACCAAAAGGTGGCCAAAGTCCAAATGGAGAAGTCTTAAGGTGAGATGGGATGAAACATCTAACATACCTCGTCCTGAGAGAGTTTCCCAATGGAAAATAGAACCTGCTCTTGCACCTCCTGCTCTAAATCCTCTACCAATGCCCAGGCCTAAAAGGCCACGATCTAATGTGGTTCCATCATCCCCAGATTCCTCCGTTCTTACTCGTGAAGCTTCGTCTAAAGTAAGTGTAGATCCTTTGCCAGCAAGTGGGTTTCAAAGGGTCTTGCAAGGTCAAGAACTATCGACCTTGAGAGGCAATTTTGCTGAAAGCAATGAATCTGATACAGCAGAGAAGTCTGTTGGGTGGCCGTCTTCTACAGATGACGAAAAGATTGATGTTTCTACCTCAAGACGGTATGGATCAGAGAACTGGATGTCAATGGGAAGGCATGAACCAACATATCCAAATCTACTTTCAGGCTTTGGGACTCATGGAGATCAAGCATCCCATCAATCGTTTCGTGATCAAACTGGTCCTCTGGCCAATCCTAGTAGAAAACATTTGTTGGATCGTGAAGGCAAACATAATGTTCTTAGTCCATGGCCTGTAGTGCCATCTAGCCTGTCACTCAATCTCTTGGACTCAAATACAAAAGGCTCTGCACAAGGTGGTGATACAACTTACCAAGTTCGAGGGAATTTGAGGTTTAGCAGTGCATTTGGTGAGTACCCTGTGCTTCATGGACATAAAGTTGAACATTCACATGGAAACTTTTTGATGCCACCACCACCATCAACTCAATATGAGAGTCCTCGTTCAAGAGAACCGTTGTCCAAACCAATATCAGGAAAACCCTGTGAAGTTTCAAAACCGAAAGACAATGATTGTAAGCTATTTGGCATTTCGCTTCTAACTAGCCTCACTGCACCTGAGCCTTCTGTATCACAGAGAAATGTTGCAAGTGAGTCAGTTGTTCACATGCATACTACATCATCACATCAACAACGTTCACTTGAAAATGATCAGAAGTCTGAGCATTCAAGGGGATCAAAACCAGCCGAGTGTATGCTGACTGATGACCATGAAAAGCTATTACAAACTTCTCAGCCATATCTGAAGGATGTGCAACCTAAATCTTATGGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAGGGGATTGCGCTTGGCAGGTCAGTTGACCTAACAAAATTCAGCCGTTATGATGAATTAATTGTTGAATTAGATCAGCTGTTTGAATTTGGAGGTGAATTAACTTCTCCACAAAAGGATTGGCTAATTGTCTACACTGATAATGAGGGAGATATGATGCTTGTTGGTGATGATCCGTGGCAGGAATTTGTTGCAATGGTTCGCAAAATTTATATTTACCCCAAAGAAGAGATTCAGAAAATGAGCCCGGGTACCTTAAGTTCAAAGAATGAAGAGAATCAATCAGCTAGTGAAGGTGTAGACGCACAAGAAATTAAATGTCTGCTGAATCATTCAGCTTCAGATACCTGATAATTCGTAGACTTAATTTCCATAGCTTCCAGATTCCAGCCTGGAGTGGAAAGTAGTAGGTGACTGTCATAAAGCCATCCAGTTGGTGAATATGAGCAGAAGAAGAAAATTCAAATTCTGAATCTGACTGTTTTATCAAGTGACTGCTTGTGTTTGGAATCAGAATATGGATGGCATGAATGAGTATCCATCCAATTTTGGACCGTGTCGTGGAATCAGTAGTATTTAGTTATGCCTTCCCTGTTATACCCTCCTAAACCCTAATATAGTAGTAGTAGTATGTAATTGTGCCTTGTGCGAGGTGATAGGAGTGTATCGGCCTTGCATTTTTAACAATCCTACCTTGTACATAGCTTTACTCGCATCTTAGAACTCGAACTCATTAATGTAATTAAGTTAATATACAAGGGCGGTTTATCTGATTTTATATATGACTGTCTTATTTTAGTGGGGTATTTTGTGCGAGTATGCTGAACGCACTGCGGATATTAAAATATTATTATGCATATGGGTAGATGTATAATTAAATTTTGCCTCTAAGTCTTCGATTGTGCCTCGCTATTTGGCGAGTGCGAGTGAGGCCATTAGCGTCATATCTTGTCCAAGGGTTTTAGTGCGAGCGGCGTAGATTGAAGTCCAAGTCATGTCAGGAGAGAAGAAAGTGGAACACTTGGGTCTGGAAATGTTGATGGAAGTTTTGAAAATTCTTTAGTGAAATGTATGTGG 3562 0.4388 MATSEVLIKVNGNDVRNGGGEVQNASSSSSSSARDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAIMTGTMFTVYYKPRTSPAEFIVPYEQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADTKRWPKSKWRSLKVRWDETSNIPRPERVSQWKIEPALAPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPLPASGFQRVLQGQELSTLRGNFAESNESDTAEKSVGWPSSTDDEKIDVSTSRRYGSENWMSMGRHEPTYPNLLSGFGTHGDQASHQSFRDQTGPLANPSRKHLLDREGKHNVLSPWPVVPSSLSLNLLDSNTKGSAQGGDTTYQVRGNLRFSSAFGEYPVLHGHKVEHSHGNFLMPPPPSTQYESPRSREPLSKPISGKPCEVSKPKDNDCKLFGISLLTSLTAPEPSVSQRNVASESVVHMHTTSSHQQRSLENDQKSEHSRGSKPAECMLTDDHEKLLQTSQPYLKDVQPKSYGGSARSCTKVHKKGIALGRSVDLTKFSRYDELIVELDQLFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSASEGVDAQEIKCLLNHSASDT 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01276 843 MobiDBLite consensus disorder prediction 809 830 - -
Pste3g01276 843 Gene3D - 309 379 - -
Pste3g01276 843 MobiDBLite consensus disorder prediction 646 688 - -
Pste3g01276 843 Gene3D - 716 809 - -
Pste3g01276 843 MobiDBLite consensus disorder prediction 380 396 - -
Pste3g01276 843 MobiDBLite consensus disorder prediction 589 624 - -
Pste3g01276 843 MobiDBLite consensus disorder prediction 673 688 - -
Pste3g01276 843 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Pste3g01276 843 CDD B3_DNA 144 246 IPR003340 GO:0003677
Pste3g01276 843 FunFam Auxin response factor 309 381 - -
Pste3g01276 843 Gene3D - 143 248 IPR015300 -
Pste3g01276 843 MobiDBLite consensus disorder prediction 379 420 - -
Pste3g01276 843 MobiDBLite consensus disorder prediction 441 466 - -
Pste3g01276 843 MobiDBLite consensus disorder prediction 398 413 - -
Pste3g01276 843 MobiDBLite consensus disorder prediction 12 32 - -
Pste3g01276 843 SUPERFAMILY CAD & PB1 domains 722 797 - -
Pste3g01276 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 39 809 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste3g01276 843 MobiDBLite consensus disorder prediction 809 827 - -
Pste3g01276 843 ProSiteProfiles PB1 domain profile. 720 802 IPR000270 GO:0005515
Pste3g01276 843 SMART B3_2 146 248 IPR003340 GO:0003677
Pste3g01276 843 FunFam Auxin response factor 716 809 - -
Pste3g01276 843 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Pste3g01276 843 MobiDBLite consensus disorder prediction 441 457 - -
Pste3g01276 843 MobiDBLite consensus disorder prediction 646 672 - -
Pste3g01276 843 SUPERFAMILY DNA-binding pseudobarrel domain 142 275 IPR015300 -
Pste3g01276 843 MobiDBLite consensus disorder prediction 17 32 - -
Pste3g01276 843 Pfam Auxin response factor 272 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste3g01276 843 Pfam AUX/IAA family 717 808 IPR033389 -
Pste3g01276 843 FunFam Auxin response factor 144 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01276 Pste-Chr3 8036430 8041503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01276 1 841 B3 DNA Binding Superfamily AT5G62000 64.605 0.0 1097
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste3g01276 B3 1.6e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01276 3 8036430 8041503 Pste2g00253 2 1613549 1618013 PCT