Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01187 GGATCAAAAGAGAGGGAGAATATGAATAATTTTTCTCATGTTCCCCCTGGTTTTAGGTTCCACCCTACTGATGAAGAACTTGTTGATTATTACCTAAGGAAAAAAGTTACCTCAAGGAGGATTGACCTTGATGTCATAAAAGTTGTTGACCTCTATAAAATTGAGCCGTGGGATCTTCAAGAGCTATGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGCCACAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCAGCAGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCAATCTATTCAAAGCATGACTTGATAGGGATGAGGAAAACCTTAGTCTTTTATAAAGGTCGTGCCCCTAATGGGCAAAAATCAGATTGGATCATGCACGAATATCGACTTGAAACAGATGAAAATGGCACACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGGCTAACAACCATGCGTAAACTAAGTGAGCATGATTCACCATGTTGGTATGATGACCAAGTTTCATTCATGCAAGACTTGGACTCACCAAAGCAAAGTTCTCAACCTAATTTGCCCTACCAACAATTCCCATATCCTTTGAAGAAAGAGATGGATTTGCCATACCATAATTTACCTCTACAACTTCCATTAGAGAACCAAAAATTGCTTCAATCAGCTGCCTCCAACTCAATGACATTGGCACCATATGGCATAGAAGAAAACCATGCCATAATGCAGCCAGCATCATCAATCATGCAACAATTTCAACATGGTCAACAAAATTTTCAGGCAGTGTTTGGAAACAATAATAATGTCAATGAACAAGTGGCTGATTGGAGAGCTCTTGACAAGTATGTTGCTTCACAACTTAGTCAAGAAGATGCATCCAAAGACAATAGTTACTCTAATGCAGCCAACATTTTTGAAGTGAAGAACAATAGCAATATTGATGAACAATTGAGGGACTTGGACAAGGAAGAAATGATGCCTGAAAATGCCTCAACATCAAACTCAAGCTGTCCAATTGACATGTGGAAATAG 1071 0.3912 GSKERENMNNFSHVPPGFRFHPTDEELVDYYLRKKVTSRRIDLDVIKVVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRLTTMRKLSEHDSPCWYDDQVSFMQDLDSPKQSSQPNLPYQQFPYPLKKEMDLPYHNLPLQLPLENQKLLQSAASNSMTLAPYGIEENHAIMQPASSIMQQFQHGQQNFQAVFGNNNNVNEQVADWRALDKYVASQLSQEDASKDNSYSNAANIFEVKNNSNIDEQLRDLDKEEMMPENASTSNSSCPIDMWK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01187 356 Gene3D NAC domain 23 166 IPR036093 GO:0003677|GO:0006355
Pste3g01187 356 ProSiteProfiles NAC domain profile. 14 163 IPR003441 GO:0003677|GO:0006355
Pste3g01187 356 Pfam No apical meristem (NAM) protein 15 142 IPR003441 GO:0003677|GO:0006355
Pste3g01187 356 FunFam NAC domain-containing protein 23 167 - -
Pste3g01187 356 MobiDBLite consensus disorder prediction 336 356 - -
Pste3g01187 356 SUPERFAMILY NAC domain 9 163 IPR036093 GO:0003677|GO:0006355
Pste3g01187 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 294 - -
Pste3g01187 356 MobiDBLite consensus disorder prediction 340 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01187 Pste-Chr3 7580010 7582045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01187 8 356 NAC Transcription Factor Family AT1G12260 56.704 1.80e-135 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste3g01187 NAM 3.2e-38 No_clan