LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g01166	ATATTTGAGCATACATCGTCAAAGAAACAACATTCGCAGCCTTTGCCGGCACACTTTGATTTTCCACTCCAATTCCGATTTTCCGACCACCGTTTTCGGACATTTTCCGGGAAAATTCGATCCCTATCACCGAAAACTCGAGCGACCATAAGACCCTCTTTCGATTCTCTTCATCTTCGGTGTTTTTTTGGCGCAGAAGAAGAAGACCCATTAGGGTTTTCGAGAAGTAATGGCTATGGCAGCCCCGGGGCAACTCAGCGTGAACGAGTCACCTTCGTGGGGATCCAGAAGCATCGATTGCTTCGAGAAGTTGGAGCAAATTGGCGAGGGCACTTATGGGTTTACATGGCTAGAGAGATAAAAACTGGTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAAGGGTTTCCTATAACTGCTATACGTGAAATCAAAATTCTAAAGAAACTACACCATGAAAATGTAATCAAGTTAAAAGAAATTGTGACTTCTCCAGATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACTGGTCTTGCTGACCGACCTGGGATGAGATTCACAGTTCCCCAAATTAAGTGTTACATGAGACAGCTTCTGACTGGGCTGCATTACTGTCACGTAAATCAAGTACTTCACCGTGATATCAAAGGGTCCAATCTTCTCATAGATAATGAAGGCAATTTGAAACTTGCTGATTTTGGACTGGCACGATCATTTTCTAATGAACATAATGCAAATCTTACAAATCGTGTCATCACATTATGGTACAGACCACCGGAACTGCTGCTTGGGACAACAAGGTATGGGCCAGCTGTAGACATGTGGTCTGTAGGGTGCATTTTTGCTGAGCTTCTTCATGGGAAGCCTATCTTTCCTGGAAAAGACGAGCCAGAACAATTAAATAAGATTTTTGAGCTGTGTGGAGCACCAGATGAGGTGAACTGGCCTGGTGTTTCTAAGACTCCTTGGTATAATCAATTTAAGCCAACAAGACCAATGAAAAGACGTCTACGCGAAGTTTTCAGACATTTTGATCGTCATGCTCTGGAATTGTTAGAGAAGATGTTGACGCTTGATCCAGCTCAGAGAATTACTGCCAAGGATGCACTTGATGCTGAGTATTTCTGGACTGATCCATTACCATGTGATCCTAAGAGACGAAGAAAAAGCGGCAGCAGCAACGACAAAATGAAGAAAATGCTAAGCGCCTTAAAATGCAGCATCCGCAGCAGCATTCACGTCTGCCCCGATTCAGCAGGCTGGGCAACAGCACCCCAAATGCGGCAAGGTCCTAACCACCGTATTCATGGCTCTCAACCTGCAGTTGCTTCCGGACCTAGCCATCACTATGGTAAGCCTCGAGGTCCCTCTGGTGGGCCAGGAAGATATCCCCCAGGTGGAAACCCCAGCAGTGGATACAATCATCCAAATCGGGGAGGTCAAGGGGGAGGAGGTGGTGGGTATGGCAGTGGGCCATATCCTCCACAAGGGCGAGCTGCACCTTATGGGTCAAGTGGTATGCCTGGTGGACCCAGTGGCGGTCCTCGCAGTGGTGGTGGTGGTGGTACTGCCTATGGAGTTGGAGCTCCAAATTATCCTCAGGGTGCTCCTTACAGTGGATCCACAGCTGGGCGTGGCTCAAACATGATGGGTGGTAACCGCAACCAACAGTATGGTTGGCAG	1725	0.4667	IFEHTSSKKQHSQPLPAHFDFPLQFRFSDHRFRTFSGKIRSLSPKTRATIRPSFDSLHLRCFFGAEEEDPLGFSRSNGYGSPGATQRERVTFVGIQKHRLLREVGANWRGHLWVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPAQRITAKDALDAEYFWTDPLPCDPKRRRKSGSSNDKMKKMLSALKCSIRSSIHVCPDSAGWATAPQMRQGPNHRIHGSQPAVASGPSHHYGKPRGPSGGPGRYPPGGNPSSGYNHPNRGGQGGGGGGYGSGPYPPQGRAAPYGSSGMPGGPSGGPRSGGGGGTAYGVGAPNYPQGAPYSGSTAGRGSNMMGGNRNQQYGWQ	575

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g01166	575	FunFam	Cyclin-dependent kinase C-2	187	421	-	-
	Pste3g01166	575	SMART	serkin_6	114	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g01166	575	ProSiteProfiles	Protein kinase domain profile.	98	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g01166	575	MobiDBLite	consensus disorder prediction	549	575	-	-
	Pste3g01166	575	SUPERFAMILY	Protein kinase-like (PK-like)	113	397	IPR011009	-
	Pste3g01166	575	PANTHER	CELL DIVISION PROTEIN KINASE	114	395	-	-
	Pste3g01166	575	CDD	STKc_CDK9_like	114	389	-	-
	Pste3g01166	575	MobiDBLite	consensus disorder prediction	437	575	-	-
	Pste3g01166	575	Gene3D	Phosphorylase Kinase; domain 1	88	186	-	-
	Pste3g01166	575	Gene3D	Transferase(Phosphotransferase) domain 1	187	420	-	-
	Pste3g01166	575	Pfam	Protein kinase domain	114	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g01166	575	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	224	236	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g01166	Pste-Chr3	7437811	7450921	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g01166	101	575	Core Cell Cycle Gene Families	AT5G10270	66.467	0.0	626

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pste3g01166		Pkinase	2.8e-68	CL0016