Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01162 ATGAAATTAACCCCAACTCATCATCCATATCTACTTGTCTTCTTGGTGCATGTCCTGAATATATGGAGAATGGTAACTTGGAGGACAGACTACTACGAAAAAACAACACTGCCCGCCCCACTACCATGGTTTGATAGGTTTCAAATAGCTTGGGAAGTTGCATCAGCTCTCGCCTTTCTTCATAGCTCAAAACCAGAACCTATCTTTCATCGTGACTTGAAACCAGCAAACATCTTGCTTGGTCGTAATCTTGAACCTATAATCTATAATCACCAACCAACCAATCACCGTTCAAGGATCAAGGCTTCAGTTATATTTCACTTTTCAACTATTTTGTCTATGTTCTTGAAGATGTTTGTTATACTTTGTTTGATGCAGGAAGTGATGGATGATTCTTGTGTTGCTGCGGATGCATTCACATACGATCGCAAAGCAATTGAAGAGTGGCTGGAAAATTACGATACATCACCAATGATAAACATGATTTTACCTCATAGGGATTTGATTACTAATCACACACTTCTTTCAGCAATTTTGAAGTGGAAGTCTGGAGATTCATGA 561 0.3886 MKLTPTHHPYLLVFLVHVLNIWRMVTWRTDYYEKTTLPAPLPWFDRFQIAWEVASALAFLHSSKPEPIFHRDLKPANILLGRNLEPIIYNHQPTNHRSRIKASVIFHFSTILSMFLKMFVILCLMQEVMDDSCVAADAFTYDRKAIEEWLENYDTSPMINMILPHRDLITNHTLLSAILKWKSGDS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01162 186 PANTHER OS02G0152300 PROTEIN 39 84 - -
Pste3g01162 186 CDD RING-Ubox_WDSUB1-like 122 171 - -
Pste3g01162 186 SUPERFAMILY RING/U-box 124 182 - -
Pste3g01162 186 Gene3D Transferase(Phosphotransferase) domain 1 4 90 - -
Pste3g01162 186 Pfam U-box domain 124 183 IPR003613 GO:0004842|GO:0016567
Pste3g01162 186 SMART Ubox_2 120 181 IPR003613 GO:0004842|GO:0016567
Pste3g01162 186 SUPERFAMILY Protein kinase-like (PK-like) 7 89 IPR011009 -
Pste3g01162 186 ProSiteProfiles U-box domain profile. 115 186 IPR003613 GO:0004842|GO:0016567
Pste3g01162 186 ProSiteProfiles Protein kinase domain profile. 1 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g01162 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 185 IPR013083 -
Pste3g01162 186 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01162 Pste-Chr3 7393135 7393803 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01162 40 84 U-box Gene Family AT5G61550 73.333 1.97e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pste3g01162 U-box 9.7e-11 CL0229