Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01142 AAGACATGCCATGAAATGTGAAACACAATGCCACATGCTTTGTCTTGAGCATCCATTCTTTGTACTTCTCTTTCCTGACTAAAAAAGCTGAAAGCAACCAACAGCCTGTCCTTATTATAGCTCCTTTCTTTCTCAAGCTTTACATACCGGGAAGAGGTCCCATATTTGGAAATTTCATTTTAAATTGTTAAAATATTTAGTTGAACCTGTTAAACAGAGCACATCATCCATACCCTTTTTGAGTTTCATTGCTCCTGTTCTCTCTCTCTTTGTCCTCCCCTACTATCAACTTCAACTTTCAATACATTATCCACACTCCTGTCTGCACAAATCCACAGTTTCATCTTCTTAAGTGGCTAACAAGGGGCCGTTTTGGTGGTGGAGGGAAGAACTTGGTGTGGTGTGTAGAAAGGTGAGTAAAGAAAGACAAGAGGGGCTGAAAAAGTGCCAGTGGTTTTCTTATGGACTGGAATTTGAAAGCGGCTTCTTGGGATTTGAGTGAAGTGAATCAGGCAAACTTACCCAACATGGAAACAATGGAAGGGTCAAGCAGATATGGAATGTATAGAAGTAGGGGGGAATTTTCTGTTGACTTGAAGCTTGGGCAGGTGGGTAATTCTGGAACGGAATCAGTGCTGACCAAGTCCAAAGATGCTGTTGGAGTGTCCAAAATGACATCTTCATCTTCAGGGTCATCTAAGAGAGCTCGTGCCCTTAACAACGGGACACAAACAGTGTCATGCCTTGTGGATGGGTGCCATTCTGATCTCAGTAACTGCAGGGACTATCATAGGCGCCATAAGGTTTGTGAAGTCCACTCCAAGACTGCACAGGTCACAATTGGAGGCCACAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTTCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGTTTAGACGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTAACGCGCTCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAGTTGGTACCTTTCTCAAGTTCACATGTATACCCATCCACTACTGTGTTAAATCCTAGCTGGGGTGGAATTGTTGGTTCTCATGGGCACAACCAAGTGCATTTGGTGGATAAGCAGGACCTTTTTCTTGGATCTTCTCCAGCCCCAGCAGCAGCCGGTTATAAAGAAGGGAAGCAGTTGGCATGCATGCAATTGCAAGGTGACCATCCTCCTGGGGGGCAGGCCCATATGTTTCTTAGGACAAGCCCATACTCAGAAAGCGGTGGGCTGAGGTGCAAACTGTTCTATGATAGCCTAACAAGTTCGGCCCACGACTCCTCCCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACCAAGTGGTGAACCCTCACTCTCCCCTTATGCAACACTTGGGCCTGAGCCTGCACGACAGCAACAACACATTGGACCCGGTTTTGGGCCCCAATGGGACTGACCATTCGTCTTCAATCTATAACATAGGTTCTAATGGATCCCATTCCCAGCCCCAGGGGAATGAAGCCCCTCCACTGTTTCCCTTTCAATGGGAATAGACCACTCCTCCTTCGCTTCTTCATTCTTTCACTCGTGCTACTTCTTCTTTTTAATTTTCATGAACTATCTATGCTGTCAAAATTTTCATCTGCCTTCAACTCACCACTTTCTTCTTCTCCTGCACACCATCAAAACCATATTTTAATATCAGGGTAATTTAATTTTATAAGTATCG 1750 0.456 MDWNLKAASWDLSEVNQANLPNMETMEGSSRYGMYRSRGEFSVDLKLGQVGNSGTESVLTKSKDAVGVSKMTSSSSGSSKRARALNNGTQTVSCLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLVPFSSSHVYPSTTVLNPSWGGIVGSHGHNQVHLVDKQDLFLGSSPAPAAAGYKEGKQLACMQLQGDHPPGGQAHMFLRTSPYSESGGLRCKLFYDSLTSSAHDSSRALSLLSSPQPHQVVNPHSPLMQHLGLSLHDSNNTLDPVLGPNGTDHSSSIYNIGSNGSHSQPQGNEAPPLFPFQWE 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01142 370 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Pste3g01142 370 MobiDBLite consensus disorder prediction 326 370 - -
Pste3g01142 370 SUPERFAMILY SBT domain 92 173 IPR036893 GO:0003677|GO:0005634
Pste3g01142 370 MobiDBLite consensus disorder prediction 158 179 - -
Pste3g01142 370 FunFam Squamosa promoter-binding-like protein 14 85 155 - -
Pste3g01142 370 MobiDBLite consensus disorder prediction 326 361 - -
Pste3g01142 370 Gene3D - 85 155 IPR036893 GO:0003677|GO:0005634
Pste3g01142 370 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 35 352 IPR044817 GO:0003677
Pste3g01142 370 Pfam SBP domain 94 167 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01142 Pste-Chr3 7309872 7313468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01142 1 370 SBP-box Gene Family AT5G50670 44.359 6.82e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste3g01142 SBP 5.5e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01142 3 7309872 7313468 Pste3g01142 3 7309872 7313468 ECH
Pste3g01142 3 7309872 7313468 Pste2g00305 2 2238779 2243205 PCT