Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01117 GAAAAAACTAAAAGTAAAACCCAAACCAAAACCCTGATTGTTGGGAATGAGAATGTGGGGTTGGGTGGTGGTTCGTAGGGCGGTTTGCAACTGGAACTTGGTGTCGCTCCGAAACATGGGCGGCGGTCCGAGAACCTTTCCCGGCGGCGTGAATAAGTGGAAGTGGAAGCGCATGCACGAGAAACTCGCCAGAGATAAACACAAGAAACTTATTGAACAAGAGAAGCAGCTCTACCAGGCTCGCATTCGCTCCCACATCCGCTCCACCCTCTCCCCCGACCACCGCTCCGCCGCCTCCGCCACCCACCGCCCCCTCTCCCCTATCCACCACGTCAAAGCCCTCGCCGACCGCTTCCTCAAAGACGGCGCCCAGGATCTCTGGAACAGCCACGACGGCCCCCTCACTCCGGCTCCGGCTCCCACTCCGACTCCGACTCCAATTCCTTCTCCTTACCCCAAACATTCTAGGGTTCGGGGTTACCGTTCTGTTGCCGAGGTTGGGAACAGTGGTGTTGGAGTCCACAAGTATAGGTTTTGGCGGAAGGGTAGCGATGATTCTTCAAGTGAGAGTGAGAGTGAAGTTGAATTGGGTCGGAAGGTGGGTAGTAGTGCTTCTTTGGGGCAATATGACGTCAAGAGAGAGAGGAGGGTTGTGCCCAAGATTTCTGAGGAGGTTGAGTTCATTAGGTATGAGCTTAATAAGAGGAAGTTCAGCCAAATTGAGGAACAACCTAACAATGAAACCATCCTAAGCAGTACACGATTTGATGAGTGCGGCATTTCACCACTAACAATCAAGGCACTTTCTTTGGCTGGTTATGTTCACATGACACAAGTACAAGAGGCTAGCCTCCCTGTTTGCCTTGAGGGTCTGGATGCCTTGGTCAAAGCTAAAACTGGCACGGGAAAAAGTGTAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCGATAAATCTCAACGGGTGCCCCCAATATATGTTCTTATTCTCTGCCCTACCAGAGAACTAGCCAGTCAAATTGCTGCTGTAGCAAAGGTTTTGCTGAAATATCATGATGGCATCGGGGTGCAAACTCTTGTTGGAGGCATACGATTTAAAATACTTGTTGTTACACCTGGTAGGTTGCTGGATCATATTGAGAACAAGTCTGGAATATCTCTGCGTTTAATGGGCTTGCGGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTGGGATTTAGAAAGGATGTGGAAAAAATTGTTGATTGTTTGCCCCGTCAAAGGCAATCTTTACTGTTTTCTGCAACCATACCAAAGGAGGTCCGTCGTATATCCCAGCTTGTTTTGAAAAGGGAACACAGATATGTTGATACAGTCGGAATCGGTTGTGTAGAAACTCCTGTGAAGCAATCTTATCTTATTGCTCCTCACGAGTCTCATTTTCAATTAGTGCACCATATTCTGAGGGAGCACATCTTGCAAACACCGGATTATAAGGTTATTGTATTCTGTATAACTGGGATGGTGACGTCACTCATGTATAACCTTCTTCGGGAAATGAAAATGAATGTTAAGGAAATACATTCTCGAAAACCTCAGCTATATCGAACACGTATATCAGATGAGTTCAGGGAGTCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCACGGGGAATGAATTATCCTGATGTTACCTTAGTCATACAGGTGGGAATTCCTTCTGACCGGGAACAATACATACACCGTCTTGGAAGAACAGGTCGGGAAGACAAACAAGGGGAAGGTGTATTGTTGATTGCTCCATGGGAAGAGTATTTTTTAGATGAAATCAAGGATCTACCTCTACAAAATTTCCCTTTACCAGATATAGATTCACAGACAAAGTTTAAGATTGAGAATTCAATGGCAAAGATTGGTAATGACATTAAAGAAGCAGCTTATCATGCTTGGCTTGGTTATTATAACTCCATCAGAGAAATTGGGAGGGAAAAGACCACTATAGCTGAGCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCCCTCTTCCGGAAAACTGCAATCAAAATGGGTTTAAAAGACATTCCAGGCATTAGAATTCGTAAATAGTTCAGCAGTTGGCGCTGACAGGTAACATGAGTAAGATACTAGCATGCATGGCACAAGGCAAGTTCCATAGGCAACATACTCAATTTTGATTTATGACTCTTGGTCGTTGAATTCTCTTTCATGATTATTCAATTGTTAGTGCCGAATGTATTTAATTTTAGCATGTGTAACACCCAGGAACCATATCAAAATTGCCATAATGCCATCCATTGATACAACAACAATCAAGTCTTATCTCACTATATGTGACGTTGGCTACATGATGGATCACTTACCATCATTCAGTCTGGTTAAAAACTAAAGTTGC 2435 0.4456 MRMWGWVVVRRAVCNWNLVSLRNMGGGPRTFPGGVNKWKWKRMHEKLARDKHKKLIEQEKQLYQARIRSHIRSTLSPDHRSAASATHRPLSPIHHVKALADRFLKDGAQDLWNSHDGPLTPAPAPTPTPTPIPSPYPKHSRVRGYRSVAEVGNSGVGVHKYRFWRKGSDDSSSESESEVELGRKVGSSASLGQYDVKRERRVVPKISEEVEFIRYELNKRKFSQIEEQPNNETILSSTRFDECGISPLTIKALSLAGYVHMTQVQEASLPVCLEGLDALVKAKTGTGKSVAFLLPAIETVLKAMSSDKSQRVPPIYVLILCPTRELASQIAAVAKVLLKYHDGIGVQTLVGGIRFKILVVTPGRLLDHIENKSGISLRLMGLRMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHRYVDTVGIGCVETPVKQSYLIAPHESHFQLVHHILREHILQTPDYKVIVFCITGMVTSLMYNLLREMKMNVKEIHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREDKQGEGVLLIAPWEEYFLDEIKDLPLQNFPLPDIDSQTKFKIENSMAKIGNDIKEAAYHAWLGYYNSIREIGREKTTIAELANRFSESIGLQRPPALFRKTAIKMGLKDIPGIRIRK 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01117 693 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 269 440 IPR014001 -
Pste3g01117 693 CDD SF2_C_DEAD 453 586 - -
Pste3g01117 693 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 238 266 IPR014014 GO:0003724
Pste3g01117 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 594 IPR027417 -
Pste3g01117 693 MobiDBLite consensus disorder prediction 111 140 - -
Pste3g01117 693 SMART helicmild6 496 577 IPR001650 -
Pste3g01117 693 Pfam DEAD/DEAH box helicase 262 428 IPR011545 GO:0003676|GO:0005524
Pste3g01117 693 SMART ultradead3 257 456 IPR014001 -
Pste3g01117 693 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 472 622 IPR001650 -
Pste3g01117 693 PANTHER RNA HELICASE 203 613 - -
Pste3g01117 693 MobiDBLite consensus disorder prediction 120 136 - -
Pste3g01117 693 Pfam Helicase conserved C-terminal domain 471 575 IPR001650 -
Pste3g01117 693 Gene3D - 449 672 IPR027417 -
Pste3g01117 693 Gene3D - 206 441 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01117 Pste-Chr3 7158461 7163909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01117 238 603 Eukaryotic Initiation Factors Gene Family AT3G19760 26.463 1.14e-38 146