Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste3g01111 | AAATCGTCCGTGCTAGCTAGCTCGAAACCTATTGTCTAGCTAGTACGTCTAAGGATAAAAATAAAGAATAAAATAATGGCATTCAGCGGCACCCAACAGAAATGCAAGGCTTGCGATAAAACTGTACATTTCGTCGAAGGTTTATCAGCCGATGGGGTCCCTTATCACAAGAACTGCTTCAGATGCAGCCATTGCAATGGCCTTCTTGCGATAAGCAACTACTCTTCCTCAGAAGGAGTTTTGTACTGCAAGGTCCACTTTGAGCAGCTCTTCAAGGAAACTGGAACCTTCCCCAAGAAATCTCAGTCCTCTGGAAAGCCTCCCAGTGATCTGAATAGAGCCCCAAGCAAGCTCTCCGCCTTCTTTTCTGGGACTCAAGAGAAATGTTCAAAATGCAAGAAAACCGTATATCCATTGGAAAAGTTGACCGTGGAAGGTGAGTTTTACCACAAATCGTGCTTTAGGTGCGCACATGGAGGATGTTTCCTGACCCCTTCAACCTATGCTGCTCTGGACGGATATCTTTACTGCAAGCCCCACTTTTCTCAATTGTTCAAGGAGAAGGGTAGCTATAGTTATCTGTCCAAGCAAACTTCATTGAAGAGAGGTGAAATGCAACAACAAGAACAACAAGAACAGGAAGCTGTCGAGAAAACAACCACCGATGATGATCGCTCGGATGCAGAGGCCGATGCAAAAGAAGCAAAGACAGACACAGAGGCAGAGCCAGAGCCAGAGGCAACCACACAGGAAGCCCAAGAAGATCACTCTGACCACGACCACTAGTTAACTAAAACATTAATTCACCAACATGGGCTTCACTTGTATCTGTCTTTGCACCATTCATCTTTGTGGTTACAATTACAATTCCATTTGCCCATTTTCATTTGGGAAGATTCCACAAAAGCAAAAGCGCTATTCTAGTATTTTTATGTGTTTCGCAAATTTACAAACAGCGTAGTCCGTAAATGGTAAATGGTGTTACGCCTTCTTTCTTTGGGCCATGTACATGTCTTTCTCAAGCCTAAGTGCATGCATCGCCAGTTATTCGTCATTTCAGATGTACTTTCATTCTTTGTATTGCCAGCAGATCAGAGTAGAAAAACAATATTTTATTGTCTCAATTCACTACCGGTTACAATAGCAA | 1147 | 0.4307 | MAFSGTQQKCKACDKTVHFVEGLSADGVPYHKNCFRCSHCNGLLAISNYSSSEGVLYCKVHFEQLFKETGTFPKKSQSSGKPPSDLNRAPSKLSAFFSGTQEKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGYLYCKPHFSQLFKEKGSYSYLSKQTSLKRGEMQQQEQQEQEAVEKTTTDDDRSDAEADAKEAKTDTEAEPEPEATTQEAQEDHSDHDH | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste3g01111 | 236 | PANTHER | OS06G0237300 PROTEIN | 5 | 87 | - | - | |
| Pste3g01111 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 130 | 168 | - | - | |
| Pste3g01111 | 236 | ProSiteProfiles | LIM domain profile. | 102 | 162 | IPR001781 | - | |
| Pste3g01111 | 236 | MobiDBLite | consensus disorder prediction | 190 | 236 | - | - | |
| Pste3g01111 | 236 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Pste3g01111 | 236 | SMART | lim_4 | 103 | 155 | IPR001781 | - | |
| Pste3g01111 | 236 | FunFam | LIM domain and actin-binding 1 | 98 | 168 | - | - | |
| Pste3g01111 | 236 | MobiDBLite | consensus disorder prediction | 176 | 236 | - | - | |
| Pste3g01111 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Pste3g01111 | 236 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Pste3g01111 | 236 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Pste3g01111 | 236 | Pfam | LIM domain | 104 | 159 | IPR001781 | - | |
| Pste3g01111 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 96 | 129 | - | - | |
| Pste3g01111 | 236 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Pste3g01111 | 236 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Pste3g01111 | 236 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Pste3g01111 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 74 | - | - | |
| Pste3g01111 | 236 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Pste3g01111 | 236 | Gene3D | Cysteine Rich Protein | 98 | 168 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste3g01111 | Pste-Chr3 | 7131153 | 7132607 | Transposed |
Transcription factors information