Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01061 TCACTCTGGCTTCCATGACCCATCCTTGTGTGTATAAACATTAACAGCACTACCCCATTAGTACACCAACATATACAACACTGCAGCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCATCTACTGCTGCCGCACTGCCCTTTTTGCCACAGTACTTTTGGACTGGGAATCTACCTATCTAGGATAGCAATCCAACAAAACGTGCTTTTGGAAACACACCCTGCTTGTTTTGGTTGTTTCTAGTTGATTATTATGACAAAGCTTTCTATAATCACGGAAACAAAGGTCATGGCAAGGGAGTAAAATAATCAAGATATATAGAGAGAGTTAGACAAGTCCAACAAACAAACCTGTCTTTCTCTTACCATCTCATCATATAACACAACCCACTGCAGGCATCCTGTCTTTTGTTCCTTGTCTACTTTTGATCTATGTGACTACCTGCAAAACCAGAAAATGGTGCCAGAGAACCTCAAGAAACAACTTGCTTTGGCTGTGAGAAGCATCCATTGGAGCTATGCAATCTTCTGGACTGATTCAACTGCCCAACCCGGGGTGTTGAGCTGGGGGGAAGGATATTACAATGGAGACATTAAGACTAGGAAAACTAGTCAAGGAGTAGAACTTAATTCTGACCAAATAGGGTGGCAGAGGAGTGAGCAGCTGCGTGAGCTGTTCAAATCTCTGAAAACTTCAGAAATCAGCCCACAAACCAAAAGGCCTTCTGCAGCACTGTCCCCAGAAGATCTCACAGATGCTGAGTGGTATTACTTGGTTTGCATGTCCTTCATATTCAACATTGGCCAAGGGTTACCAGGCAGAAGTCTAGCGAAGGGTCAACCCATTTGGCTGAACAATGCTCATTCCGCTGATTGTAAAGTTTTTAGCCGTTCTCTGCTGGCAAAGAGTGCATCTATTGAGACGATTGTGTGCTTTCCGTTTAGGGAAGGGGTCATTGAGCTAGGTACTACTGAACAGGTCTCCGAAGATTTGAGTCTCATTGAACGGATCAAAACTTCTTTCTTGAATAGTCTGCACGTAAATGTTCCTAATGATCCAGGAGCTACATTAAAATCAAAGAACCTGGAAGATCATGCTTATGTAACATTTGATCATAATGCTTATGATGTTGAATCAATTCCAGAAGTTGGGTACGACATAGCCAACACAACCTCTCCCGATGGTAGTTCAAATGCATTCCAAGCCAATCAACCACTAGATGAAACATTCATGGTTGAAAGGATAACCGGTGGCACTTCTCAAGTCCAAAGCTGGCAAGTTATTGATGATGAACTGAGTAACTGTGTCCATAACTCCATGAATTCCAGCGACTGTATATCACAAACGTTCGCCAGCCCTGAGATTATTGCTTCTGCCCCCAATTATAACAAGCCTTCTGACCCATGTACCCGAGATCTTCAAAAGTGCAATAACCCAAAAATGACCGTAGTGGATCCTCGAAGTGATGATTTGCATTATCAGAGAGTTCTTTCTTCCCTTTTAAAAAGCTCTGACCAGTTAACTATGGGAATGCATTTGCAAAAATTTCATCAGGAATCAAGCTTTGTTAGTTGGAAAAAAGGAGAGTCAATGGATTGCCAATGGCCAAGAGCAGGAACCTCACAAAAGTTATTGAAGAAAATATTGTTTGAAGTTCCTCAAATGCACTTGGATGGGCTGCATGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAATGAGAGTAGAGGCTGATGAAAACGGCATGAACCATGTTATGTCAGAAAGGAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACTCTTAGGTCAATGGTCCCCTCATTCAGTAAGGATGATAAAGTTTCAATACTAGATGATGCAATTCAATACCTCAAAAAGCTTGAGAGAAGGATAAAAGAGTTGGAAGCTCAAAGGGGGGTAACAGATACAGAGACTGGAACTAGAAGATCACCTCAGGATATGGTGGAGAGGACTTCTGATCATTATTTTAGCAAAAATAATAATAGCAAGAAACCATGGATAAAAAAGAGGAAGGCTTGTGGTGTAGATGAGACAGGAAGAGAGATTAATTCAGATGCTTTAAAAGGAAGTTATTCCAATGATGTTACTGTGAGTACTAGTGACAAGGAAATTGTGATAGAAATGAAGTGCCCCTCGAGAGCAGGAAGGCTGCTAGAAATTATGGAAGCGGTTAACAGTTTCAATATAGATTTTAATTCAGTTCAGTCAACAGAAGCTGATGGAAATCTTTATCTGACCATTAAATCTGTGTTCACAGGAGCAACTATAACAACAACCAAAAGAATCAAACAAGCACTCCAAAAAGTGGCTTCGAAGTGCTGAATTTTTGTCTTTGCCTAAACCGTGAGGGTGTTGGATACATAGAGAATTCATTAAATTGATGGAGTTAGCTCTAGGAGATTCTTTTGAAGATTTCTCATAAGAGGAAAATTTAGTCTTCCATTCATGTTTCGGCTATACCATAACTCTTGGTGACGAAACATATGGACTTTTAAGCACTTGTAAATGGGTAGGTAGGCTTAATTGACTAGATTAATTTATTTAATGCCATCTGCTCCTATGGCATCACAAAGGTTGACCAATGACTACATATTAATTAATAGAGAGACATACATTATTAATTATGATAGTCTTTAGACCGTGATGTTGAAAAATTAAAATGAACCTACCTAGATGATGTTCCTAGACTACTATACTATGAACAACTATTTTG 2743 0.4007 MVPENLKKQLALAVRSIHWSYAIFWTDSTAQPGVLSWGEGYYNGDIKTRKTSQGVELNSDQIGWQRSEQLRELFKSLKTSEISPQTKRPSAALSPEDLTDAEWYYLVCMSFIFNIGQGLPGRSLAKGQPIWLNNAHSADCKVFSRSLLAKSASIETIVCFPFREGVIELGTTEQVSEDLSLIERIKTSFLNSLHVNVPNDPGATLKSKNLEDHAYVTFDHNAYDVESIPEVGYDIANTTSPDGSSNAFQANQPLDETFMVERITGGTSQVQSWQVIDDELSNCVHNSMNSSDCISQTFASPEIIASAPNYNKPSDPCTRDLQKCNNPKMTVVDPRSDDLHYQRVLSSLLKSSDQLTMGMHLQKFHQESSFVSWKKGESMDCQWPRAGTSQKLLKKILFEVPQMHLDGLHESQEENDYKEGMRVEADENGMNHVMSERRRRAKLNERFLTLRSMVPSFSKDDKVSILDDAIQYLKKLERRIKELEAQRGVTDTETGTRRSPQDMVERTSDHYFSKNNNSKKPWIKKRKACGVDETGREINSDALKGSYSNDVTVSTSDKEIVIEMKCPSRAGRLLEIMEAVNSFNIDFNSVQSTEADGNLYLTIKSVFTGATITTTKRIKQALQKVASKC 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01061 629 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 427 476 IPR011598 GO:0046983
Pste3g01061 629 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 189 IPR025610 -
Pste3g01061 629 Gene3D - 421 490 IPR036638 GO:0046983
Pste3g01061 629 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 430 490 IPR036638 GO:0046983
Pste3g01061 629 Coils Coil 466 493 - -
Pste3g01061 629 Pfam Helix-loop-helix DNA-binding domain 431 477 IPR011598 GO:0046983
Pste3g01061 629 PANTHER TRANSCRIPTION FACTOR TT8 2 627 - -
Pste3g01061 629 SMART finulus 433 482 IPR011598 GO:0046983
Pste3g01061 629 ProSiteProfiles ACT domain profile. 561 629 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01061 Pste-Chr3 6842161 6846319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01061 2 629 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 46.951 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste3g01061 bHLH-MYC_N 5.9e-52 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01061 3 6842161 6846319 Pste3g01061 3 6842161 6846319 ECH