Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01050 ATGATGTCGAAAAGCAAAGAGAAGAAGAAGAAGAAAAAGAGCGATAGCGAAGAAGACGACGACGTTTTCTACTACCGCTACAGCAGCGCCAACCCAACCCTAACCCTAACCCAACACAATCCTAATCCCAATCCCAATTCCAAAGCCAACAACAAGGGATCCTCGTCTTCTTCGACCTTAGCCCCATCGAAATCAACGTTGTACGTTTCCAACATTGACTACTCCCTAACCAACTCCGACCTCCACACGCTCTTCTCAACGTTCGGCCGCATCGCCCGCGTGACCGTGCTCAAGGACCGCCTCACGCGCCAGAGCCGCGGCGTGGCCTTCGTCCAGTTCGTTTCCCGCCACGACGCCCGCACCGCCGCCTCCCAGATGCACCGCAAAATCCTCAACGGCCGCACCCTCACCGCCTCTATTGCCGCCGACAACGGCCGCGCTGCCGAGTTCATCCGCAAGCGCGTCTACCGCGACACCGCCCGCTGCTTCGAGTGCGGTGCCGACGGCCACCTCTCCTACGACTGCCCCCGCAACCAGCTGGGCCCCCGCCAGCGCCCCGAGCCCAAAAAGCCCCGCCGTGGGCCCCACCGCCTCCATGACAACGACCACAACAACGACGAAAACGGCGGCGACGATTCCGATGAGGGTGGCGCGGACCGGTTCGAGGACGATAATTGGGCCTCTGTTGTCGACGACGGCGCCGGCGAGAGGTTGATGGCGGGAAACCAGGATAACGATGTTGTGGCCCCAAAGGGTGTGAAGAAGAAGAAGAAAGCTGGGTACTTTAGTGATGAGAGTGATGATGATGATTGA 813 0.5941 MMSKSKEKKKKKKSDSEEDDDVFYYRYSSANPTLTLTQHNPNPNPNSKANNKGSSSSSTLAPSKSTLYVSNIDYSLTNSDLHTLFSTFGRIARVTVLKDRLTRQSRGVAFVQFVSRHDARTAASQMHRKILNGRTLTASIAADNGRAAEFIRKRVYRDTARCFECGADGHLSYDCPRNQLGPRQRPEPKKPRRGPHRLHDNDHNNDENGGDDSDEGGADRFEDDNWASVVDDGAGERLMAGNQDNDVVAPKGVKKKKKAGYFSDESDDDD 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01050 270 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 270 IPR044598 GO:0000398|GO:0005689
Pste3g01050 270 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 6 149 - -
Pste3g01050 270 Gene3D - 152 197 - -
Pste3g01050 270 SMART rrm1_1 66 139 IPR000504 GO:0003723
Pste3g01050 270 MobiDBLite consensus disorder prediction 33 61 - -
Pste3g01050 270 SUPERFAMILY RNA-binding domain, RBD 38 147 IPR035979 GO:0003676
Pste3g01050 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 136 IPR000504 GO:0003723
Pste3g01050 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Pste3g01050 270 MobiDBLite consensus disorder prediction 174 270 - -
Pste3g01050 270 MobiDBLite consensus disorder prediction 183 206 - -
Pste3g01050 270 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Pste3g01050 270 MobiDBLite consensus disorder prediction 249 264 - -
Pste3g01050 270 SUPERFAMILY Retrovirus zinc finger-like domains 151 178 IPR036875 GO:0003676|GO:0008270
Pste3g01050 270 Gene3D - 1 149 IPR012677 -
Pste3g01050 270 ProSiteProfiles Zinc finger CCHC-type profile. 161 177 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01050 Pste-Chr3 6774573 6775385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01050 65 141 Eukaryotic Initiation Factors Gene Family AT1G49760 35.065 7.30e-07 48.1