LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g01046	GATACGCAGTTTTCCTTCAGTTTATATATCAGGGTTCAGCTTCTTTGCCTGCTAGAATGAGATTCTTGTCAATTTAAACTAAAATCTTTGGATTCTAGTTTGAATACTCTCACCTCTTGTTTAGAGACTATTATTTAAGAGATGAGTCAAATGACAAATGACGTGCATGACAATGTGCAATGCGATGATCAGACTGAGTCACAGTTAAATGATGAAGGTAACGGAGGAGGCAGCATTCTGAAGAAAGGGCCATGGACACCTGCTGAGGATACCATTTTAATGAACTATGTCAAGAAGCATGGAGAGGGGAACTGGAATGCTGTTCAGAAAAACTCAGGTCTGTCTCGTTGTGGAAAAAGTTGTCGACTGCGATGGGCCAATCACCTAAGGCCAGATTTAAAGAAAGGAGCATTTACCTCAGAAGAGGAGCGATTGATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCGGCGCACTTGCCTGGCCGTACAGATAACGAAATAAAAAACTACTGGAATACCAGGATTAAGAGGCATCAACGGGCTGGTAAGCCACTTTATCCTCCTGGAGTATTTCCGCAAGCTTTTCAAGAGTGTAAGAAAGGCCAAGGTACCGGTGAAATCAGTGATGGTGATGGACGGCATCATGATTTTTTGGAGAAAAAAAATTATGAGATGCATGATGCAATATTTGACAGTCTTAGGGGAAATCAGGGAATCTTACCTTTTGGGTCTGAGCTTCATGATATTTCTGCTAATAGCATTCTACCAAATGGTTTTGGTTCTCCTCCATACTGTAATTTTGTGCCATCTACATTACCTAGCCATGATCATCTTCAAGAGTCAACCATGCCTTTTGTTGGTTCCTGTTTATTGAACAGCAATGGGTTTAATCCCTTTGACCATACCAAGGACACTACCTCTGATAAGTTTACAGAATCATTTGGATTGCATTCTCCATTTGATCGTGGAGCCTCCTCACATGGCTCAATTTGTTACAGTCATTCACTATCAAATGGCAATTCCTCTACTTCTAAGCTGACTTCTGAGGCTGTGAAATCAGAGCTCCCTTCACTCCAATACCCAGAAACCGAATTTGGTAGTTGGGGTACCTCTTCCCCACCTCCATTGAATGAGTCCGTTGATGTTTTTATTAATTCTCCTCCACCACCTAATGTACTTGACTTAGGCTCATCACCAATTATTACTTGCTCGCTTGATGAATTCCTTTATCAGGCAAAGGCTCTTAGTTGTTCAAAGAATAACAATTGTTCTGAAAAGAGTTCAAATTCATCTACTGCTACCCCTGGTGACAGAGCTGAGAGTTCTGCTTTGAACATGTATGAGACAGAATGGGAGGATTATGCTGATCCTGTATCTTCCTTGGGTGCAACTTCTATCCTGAATGAGCATGGTATTGTAAGCACCACCAACGGAAACTCATGGGAACCTTTTGAGACCATTAGTGGAAACAACCAGAAATTGCAGTCAGTTGACCAGGTGTGGGCACCCAAGAGTGAAAATCAATCAATATCTTGTGTGAATCTCACTTGGCCAGATGTCTTGCTAACTTCAGAATGGCAGGAGCAGTATTCTCATGTTGATGCCCGTGGTTATATCAAGGGACAG	1641	0.4205	MSQMTNDVHDNVQCDDQTESQLNDEGNGGGSILKKGPWTPAEDTILMNYVKKHGEGNWNAVQKNSGLSRCGKSCRLRWANHLRPDLKKGAFTSEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRHQRAGKPLYPPGVFPQAFQECKKGQGTGEISDGDGRHHDFLEKKNYEMHDAIFDSLRGNQGILPFGSELHDISANSILPNGFGSPPYCNFVPSTLPSHDHLQESTMPFVGSCLLNSNGFNPFDHTKDTTSDKFTESFGLHSPFDRGASSHGSICYSHSLSNGNSSTSKLTSEAVKSELPSLQYPETEFGSWGTSSPPPLNESVDVFINSPPPPNVLDLGSSPIITCSLDEFLYQAKALSCSKNNNCSEKSSNSSTATPGDRAESSALNMYETEWEDYADPVSSLGATSILNEHGIVSTTNGNSWEPFETISGNNQKLQSVDQVWAPKSENQSISCVNLTWPDVLLTSEWQEQYSHVDARGYIKGQ	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g01046	500	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	83	137	IPR017930	-
	Pste3g01046	500	Gene3D	-	90	136	-	-
	Pste3g01046	500	FunFam	Transcription factor GAMYB	90	136	-	-
	Pste3g01046	500	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	30	82	IPR017930	-
	Pste3g01046	500	MobiDBLite	consensus disorder prediction	18	37	-	-
	Pste3g01046	500	ProSiteProfiles	Myb-like domain profile.	30	82	IPR001005	-
	Pste3g01046	500	SUPERFAMILY	Homeodomain-like	34	129	IPR009057	-
	Pste3g01046	500	ProSiteProfiles	Myb-like domain profile.	83	133	IPR001005	-
	Pste3g01046	500	FunFam	MYB-related transcription factor	34	87	-	-
	Pste3g01046	500	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	17	491	-	-
	Pste3g01046	500	Gene3D	-	34	87	-	-
	Pste3g01046	500	MobiDBLite	consensus disorder prediction	378	397	-	-
	Pste3g01046	500	CDD	SANT	37	82	IPR001005	-
	Pste3g01046	500	MobiDBLite	consensus disorder prediction	378	399	-	-
	Pste3g01046	500	SMART	sant	34	84	IPR001005	-
	Pste3g01046	500	SMART	sant	87	135	IPR001005	-
	Pste3g01046	500	Pfam	Myb-like DNA-binding domain	88	131	IPR001005	-
	Pste3g01046	500	Pfam	Myb-like DNA-binding domain	35	82	IPR001005	-
	Pste3g01046	500	CDD	SANT	90	131	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g01046	Pste-Chr3	6751110	6754805	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g01046	28	487	MYB Transcription Factor Family	AT3G11440	43.305	4.50e-106	325

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pste3g01046		Myb_DNA-binding	8.4e-15	CL0123