Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01013 ATGACATTATCACATAGTTTGAAAACTTGTTCCTCTGAAGCTTTTAGCTTCTCTGCCACATCGAAAGACATTTTTCATTGTGTTGAAGAAAGCAACAATAATGAGGTGACAACAATTGAGAAGGATGTAAAATCTAAACAAGATCATGGTTCTAATTCCAGTTCCAATATGGGGTTAGACTTTGTTAACATCTCGACTCATGAATCAATTTGTGGGTCCAATGTGGAATTTGATTTTTTCAACCCAATGAACATGAAGGGTTCTTCTTTTTCTCAGACTAATGAAAAAGAAGGAAAAGATGAAACCAATAAAGAGGACAAGCAGTCAGAGGCTAAGAATTTTTCTTGTAACTTTTGCAAGAAAGAGTTCTCTTCAGCACAAGCTTTGGGAGGACACCAAAATGCTCATAAACAAGAACGTGCTCTTGCAAAATGTGACCAAAAGATTGATGTTGGTGCTTTTGGACACTCTTCATATTTTTATTACTCTTACCCCTCACACTCCTTTTATGGATCTTACAATAGGGCACTTGGGGTTAGAATTGAATCTATGATTCATAAGCCATCGTATCCTTCAAACACATATGGTTTAAGATTTGGTCAAAGGTGGTCAGCACAAGGGATGCCAAACCCTTCTCTTGATAGATTGAGGATGGAGGATTTGAATGCAAAAGATGGAATTAGGATGGTAAGGAGTGGTACAACTTTGAAGACCGAATATGATGGTGGTGGTATTATTGGACAGTTTTCTTTTCTTGGAGATTCTTCTACAAATGTGGCTATGAAAACAAACTTGTCTCTTGATAACACAACATTTAGTAACATAGTTGGTGATCATCCCAAGCATGAAGAGAATCTCCAATCTAATTCTTCTCAGATTGATTTATCACTTAAGCTTTAA 900 0.3644 MTLSHSLKTCSSEAFSFSATSKDIFHCVEESNNNEVTTIEKDVKSKQDHGSNSSSNMGLDFVNISTHESICGSNVEFDFFNPMNMKGSSFSQTNEKEGKDETNKEDKQSEAKNFSCNFCKKEFSSAQALGGHQNAHKQERALAKCDQKIDVGAFGHSSYFYYSYPSHSFYGSYNRALGVRIESMIHKPSYPSNTYGLRFGQRWSAQGMPNPSLDRLRMEDLNAKDGIRMVRSGTTLKTEYDGGGIIGQFSFLGDSSTNVAMKTNLSLDNTTFSNIVGDHPKHEENLQSNSSQIDLSLKL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01013 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Pste3g01013 299 MobiDBLite consensus disorder prediction 93 108 - -
Pste3g01013 299 Pfam C2H2-type zinc finger 114 138 - -
Pste3g01013 299 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Pste3g01013 299 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 299 IPR044246 GO:0009788
Pste3g01013 299 MobiDBLite consensus disorder prediction 88 108 - -
Pste3g01013 299 Gene3D Classic Zinc Finger 88 152 - -
Pste3g01013 299 SUPERFAMILY beta-beta-alpha zinc fingers 111 141 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01013 Pste-Chr3 6438311 6439210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01013 109 204 C2H2 Transcription Factor Family AT5G10970 51.515 2.02e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste3g01013 zf-C2H2_6 1.2e-05 CL0361