Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00988 ATGTGGAAGCAATTTCTCATCACCAACTCTTGCTTTGCTTCTCAATGGTGTTACATAGTCTACCCTCCTCCCCCTCCTTCAATTTTTCTCACTGATGGTGATGATGACACTTCAGGATTTGAATTCTCTCCTCTAATAGTTGCTGTGATTGGAATTTTGGCAAGTACTTTCATCTTGGTCACTTACTATACCATTATCTCAAGGTTGTGCAGGCACAGAAGAAGCACCAATGATGATGGGGACAACAATGAATTGGCTCAGATTTCATCATCTTCTACTTCTTCCAATTCTGGCCTTGATGAGGCTCTCATCAAATCAATCACAGTGTGCAAGTACAACAAAGTTGGAGGGGTTGTGGAGGGTCATGACTGTTCAGTGTGTTTGAGTGAGTTTCAAGAGAATGAGAGCTTGAGGTTGTTGCCAAAATGCAACCATGCTTTTCATCTCCCTTGTATTGATACTTGGCTCAAGTCTCATGCCAATTGCCCCTTGTGCCGTTCCACCATCACTGTTTGTCCTAATCCTTCTATGGAACCACCACCAAGAATCATTGTTAATGCCTTGGAACACCAGCAAAGAAGTGACCATGTTGTTTTCATTGTTGAGAGTTCTGAGCAACAAGGGAGGGTGGCTAGTTTTGGTGCTCAAGTCATGCCTAAGTTGGCAGTGGAAGATGGAGACAGCATTGAACAAAGAGAAGGGCATTAG 708 0.4336 MWKQFLITNSCFASQWCYIVYPPPPPSIFLTDGDDDTSGFEFSPLIVAVIGILASTFILVTYYTIISRLCRHRRSTNDDGDNNELAQISSSSTSSNSGLDEALIKSITVCKYNKVGGVVEGHDCSVCLSEFQENESLRLLPKCNHAFHLPCIDTWLKSHANCPLCRSTITVCPNPSMEPPPRIIVNALEHQQRSDHVVFIVESSEQQGRVASFGAQVMPKLAVEDGDSIEQREGH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00988 235 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Pste3g00988 235 CDD RING-H2_EL5-like 123 166 - -
Pste3g00988 235 Pfam Ring finger domain 123 166 IPR001841 -
Pste3g00988 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 171 IPR013083 -
Pste3g00988 235 PANTHER RING-H2 FINGER PROTEIN ATL16 35 202 IPR044600 GO:0016567|GO:0016740
Pste3g00988 235 SMART ring_2 124 165 IPR001841 -
Pste3g00988 235 MobiDBLite consensus disorder prediction 81 98 - -
Pste3g00988 235 MobiDBLite consensus disorder prediction 78 98 - -
Pste3g00988 235 FunFam RING-H2 finger protein ATL54 99 172 - -
Pste3g00988 235 SUPERFAMILY RING/U-box 118 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00988 Pste-Chr3 6235984 6236954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00988 10 169 C3H Transcription Factor Family AT3G03550 55.801 2.00e-57 184