Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00986 ATCGGAAAAAAATGGGTCCGAGGAAGAAGAAGCCGAATCTCCAACAGCAACAACCTTCCAAGTTCGGCATTCAGCACTTCTTCGAACGCGCTTCGCAGAAGCAGCAGCAGGAGCTGCAACCCCACACCAACACCATTCCATCACCAACAATACACCACCCTCACAACAACAACAACCCACCAAGGTTTCTCCCAGAACCGCTCCAGATTCTCACCAGGAATGTTGGTGAAGCAGAGCCAGGATGATGGTGCTGATGAGGTTACTTGGAAGATATCTCCGGTCAATGAGAGGCTTCAGGCGGTTTCGAAACAGACGCCTGAAGTGATCAAGGCGTTGGCTGCCTCTTCCAAAATCAACTTGTCGCCGATCCGTGGCAGTGACAGGGGCAAGGAGCTTCAAAGGATAAACTCGGCCTGTGATGTGAGTGGACAGAGTCCCTTCAGGACTCCCCCGTCTTACCGCCCTGACAAGGTGCAGCGTGTCAAGGATATCGATTGTATTCGACCATGCAATAAGCTTTTATTAAGACAGAACAAAAAGGCATTGCTTGAACTTTTAGATCAAGTTGAAGATGCCATTGCTGTTGATGATGATACAGTTTGTAATAAGAACATTCATTCCTTTAAAGTACCTCAAGATCAAATTGCTAATGAGCTCCCTGTCAAAGTCAATCCTGCAGTAGAAAGGACCAAATCACACATACATAAAGTACCTCAAGATCAAATTGCTAATGAGCTCCCTGTCAAAGTCAATCCTTCTGTAGAAAGGACCAAATCACATATACATAACATACCCCAAGATGAAATTGCTAATGAGCTCCCTGTCAAAGTCAACCCAGTAGTAGAAAAGACCAAAGCACATACACATAAAGTATCTCAAGATCAAATTACTAATGTGCTCCCTGTCAAAGTCAATCCTGCAGTAGGAAGGACCAAATCACACATACCTAAAGAGGTTGTTGAAGTCTTCTCCGATTCTAATTATTTGGTTTTGGAGGTAACTGAACTTAGGTCTGCTGATTCATGTGCTGCTCAACCCTCATACAAGGTGCTTCGTTTGCTAAATGAACAAACTGGGGAAGAGCGTGCTGTAAACTTACACAATGAGTGGTCTGATAGTGTCGTTGCTCCTGGTGATACTGTGCACATAATTGGTCAATTCGATGAAAGGGGAAATTGTGATATTGATCATGATAAAAACCTTTTGATTGTACACCCTGATATTCTACTGTCTGGAACACGGGTTGCAGCCAGTTTTTGTTGCCCAAGAAGAACTGTCTTGGACGAGAGGCTAAAGAACAATGATTACTCAATTGCAGCATTAACTGGAACCATGCTGCACCAAGTTTTCCAGGCTGGGCTTACGAAAGACAATCCTATGGTAAATTTCATGGAAGATTATGCAGAAGTGGTATTACAGAGAAACATTGAAAGTTTGTATGCATGTGGAGTAAATGAAAATGATGTTCGCAAAACCTTGAGAGATGCTATCCCTAGAATATTAAGTTGGATCACGGAATTCAAAAATATGAAGGAAAGAATAAAACCCAATGTCAATTTTGGATATGATGATGGGCCAAAGAATGTTGGTATATCTGAGGTAATTGATATTGAAGAGATGGCATGGGCTCCAAAATATGGTTTGAAAGGGATGATTGATGCTTCTGTCAGTGTGAAAATTCGATCACAAAAAGATGAACTTGAGGAAAAGATCATGCCATCATTAGTAGAACACAAAGCCCAAGTAATATTGTACACTCTCCTGATGTCCGAAAGGTATCAGAAGACTGTTGATTCTGGTCTTCTATATTATCTCCAATCTGATCAGACACAGGGAGTTGTGGTTCAAAGATCTGATTTAACTGGTCTAATAATGCGACGAAATGAACTAGCGAGTGATAGTTCTAGCATTTGCAGAGGTTGTCGTCATCTTAATGTATGTAGCATTTATCATAAGGCACATGGTGGAAACACAGGGAGCAGTGGGTTGGGAGAAGTTTTTGATTCCCTTACTAATCACTTGACATCTTTGCATTCTAAGTTTCTCCGTCATTGGGATCACTTGATTGACTTAGAAGCGAAAGTAGCGGAGCTTTTAAATAAAGAGGTGTGGCAATCACATAGTTCAAAGAGTCCAAACAGTGGTGGCCTTTATTCTATTGTTCTTGATGCTTCACAAGGAATACCTTACGAGAAATCCCTTAAAGATAATCAATTCATTTATCGTTTCATACAACAAGAATCTTCTTCTAGCCTCTCTGGAGTTTCTGATGTATCTTCTAGTGCCCCGTTGAAAAATGATTTAGATTTCACACTGCGAAGTGGAGATCATGTGATACTGAGTAATCAATCTAGCCGTCAAGTTGTTGCTAAAGGGGTGATATTTGATATTAGTCCGATCCATGTTTCCTTTTCTAAGTGTTTACGAATTCCTGGGAGTTCTTCCACTGCACACGATCTCATTCAGCAGGTTTGGAGAATTGACAAGGATGAATATGTGTCTTCATTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCGAAGTGCTCATCTGCGGAGGATGATTGTTGATCTTGAGGCTCCTAGATTTGACAATGGATCTGTAGTTAGCCAGGATCCAGCGATATCCTATGTTTCGTCAGAGAAGAGTTTGAATGATGACCAACGTAGAGCGATTCTCAAGATACTTGCAGCAAAAGATTATGCACTTATATTAGGAATGCCTGGAACAGGGAAAACGTCTACATTGGTCCATGCTGTGAAAGCCTTATTGATTAGAGGGACATCCATTTTGCTAACTGCCTATACAAATTCTGCTGTTGATAATTTACTTGTCAAATTAAAAGCACAGGGGATTGACTTTGTTCGCATTGGAAGACATGACGTAGTTAATGAGGAGGTCAAAGAACACTGCCTCTCAGCAACGAATGCGCAAGGTGTTGAAGATATCAAAATAAGGTTGGAACAAGTCAAAGTTGTTGCAGTAACTTGTCTTGGCATTTGTAGTCCCTTGCTTTCCAACATGAGGTTTGATGTATGCATTATGGATGAAGCTGGACAGACAACTCTACCAGTGTCCTTGGGTCCTCTAACATTTGCCTCGATGTTTGTACTTGTTGGGGATCATTATCAACTGCCACCACTTGTCCAGAGTGAAGAGGCCCGTGAGAATGGCATGGGGCTCTCAGAAGCACATCCAGAGGCTATTTTAGCTTTACAGAGTCAGTATCGAATGTGTCAGGACATTATGGACCTTTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCATTTGAGGTGGCTAATGCAAAGCTCGAGTTTTCAGACTTAAACTGTTTGAATCCTCAAAGGCCGGTGATATTTATTAATACTGACAAGTTGCCTGCTTTAGAGACAAGAGATCAGAAGACTGTAAATAACCCTATTGAAGCTCACATAATTGCTGAGATTGCAAATGAATTAGTAAAAAATGGAATCGGAAGAGAACACATTGGCATTATTACTCCTTATAATTCACAGGCAAACCTTATCCGGCGTGCTGTTAGCATGACTTCCTTGGAGATACATACCATTGACAAATATCAGGGTAGGGATAAGGACTGTATATTAGTATCTTTTGTAAGGTCCATGGAAAACCCGACAAGCTGTGCTGCTTCTCTGCTTGGAGACTGGCATAGGATAAATGTGGCTCTTACTCGGGCTAAGAAAAAGTTGATCATGGTAGGGTCTCGAAGAACACTAGTAAAGGTTCCTCTACTAAAACTTCTAATTAAGAAGGTTGAGGAGCAATCTGGAATTTTAAGTGTGGATAAGAAGGATATCGATCGAAAAGGTTATTATATCATCATTTTGATTGATTTAGAA 3885 0.41 IGKKWVRGRRSRISNSNNLPSSAFSTSSNALRRSSSRSCNPTPTPFHHQQYTTLTTTTTHQGFSQNRSRFSPGMLVKQSQDDGADEVTWKISPVNERLQAVSKQTPEVIKALAASSKINLSPIRGSDRGKELQRINSACDVSGQSPFRTPPSYRPDKVQRVKDIDCIRPCNKLLLRQNKKALLELLDQVEDAIAVDDDTVCNKNIHSFKVPQDQIANELPVKVNPAVERTKSHIHKVPQDQIANELPVKVNPSVERTKSHIHNIPQDEIANELPVKVNPVVEKTKAHTHKVSQDQITNVLPVKVNPAVGRTKSHIPKEVVEVFSDSNYLVLEVTELRSADSCAAQPSYKVLRLLNEQTGEERAVNLHNEWSDSVVAPGDTVHIIGQFDERGNCDIDHDKNLLIVHPDILLSGTRVAASFCCPRRTVLDERLKNNDYSIAALTGTMLHQVFQAGLTKDNPMVNFMEDYAEVVLQRNIESLYACGVNENDVRKTLRDAIPRILSWITEFKNMKERIKPNVNFGYDDGPKNVGISEVIDIEEMAWAPKYGLKGMIDASVSVKIRSQKDELEEKIMPSLVEHKAQVILYTLLMSERYQKTVDSGLLYYLQSDQTQGVVVQRSDLTGLIMRRNELASDSSSICRGCRHLNVCSIYHKAHGGNTGSSGLGEVFDSLTNHLTSLHSKFLRHWDHLIDLEAKVAELLNKEVWQSHSSKSPNSGGLYSIVLDASQGIPYEKSLKDNQFIYRFIQQESSSSLSGVSDVSSSAPLKNDLDFTLRSGDHVILSNQSSRQVVAKGVIFDISPIHVSFSKCLRIPGSSSTAHDLIQQVWRIDKDEYVSSFAIMRFNLVQLFLQNDRSAHLRRMIVDLEAPRFDNGSVVSQDPAISYVSSEKSLNDDQRRAILKILAAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTAYTNSAVDNLLVKLKAQGIDFVRIGRHDVVNEEVKEHCLSATNAQGVEDIKIRLEQVKVVAVTCLGICSPLLSNMRFDVCIMDEAGQTTLPVSLGPLTFASMFVLVGDHYQLPPLVQSEEARENGMGLSEAHPEAILALQSQYRMCQDIMDLSNALIYGDRLRCGSFEVANAKLEFSDLNCLNPQRPVIFINTDKLPALETRDQKTVNNPIEAHIIAEIANELVKNGIGREHIGIITPYNSQANLIRRAVSMTSLEIHTIDKYQGRDKDCILVSFVRSMENPTSCAASLLGDWHRINVALTRAKKKLIMVGSRRTLVKVPLLKLLIKKVEEQSGILSVDKKDIDRKGYYIIILIDLE 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00986 1295 CDD DEXXQc_DNA2 888 1082 IPR026851 GO:0017116
Pste3g00986 1295 Pfam DNA replication factor Dna2 356 558 IPR014808 -
Pste3g00986 1295 Gene3D - 831 982 IPR027417 -
Pste3g00986 1295 Gene3D - 987 1077 IPR027417 -
Pste3g00986 1295 MobiDBLite consensus disorder prediction 1 49 - -
Pste3g00986 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 888 1261 IPR027417 -
Pste3g00986 1295 CDD DNA2_N-like 411 632 - -
Pste3g00986 1295 Gene3D - 767 830 - -
Pste3g00986 1295 Gene3D - 501 649 IPR011604 -
Pste3g00986 1295 Pfam AAA domain 992 1057 IPR041677 GO:0004386
Pste3g00986 1295 Pfam AAA domain 889 980 IPR041677 GO:0004386
Pste3g00986 1295 FunFam DNA replication helicase 1081 1286 - -
Pste3g00986 1295 Gene3D - 1081 1288 IPR027417 -
Pste3g00986 1295 Coils Coil 172 192 - -
Pste3g00986 1295 MobiDBLite consensus disorder prediction 11 49 - -
Pste3g00986 1295 CDD SF1_C_Upf1 1083 1253 IPR047187 -
Pste3g00986 1295 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 831 980 - -
Pste3g00986 1295 PANTHER DNA2/NAM7 HELICASE FAMILY 171 1269 IPR045055 -
Pste3g00986 1295 Pfam AAA domain 1067 1251 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00986 Pste-Chr3 6197817 6226186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00986 63 219 Core DNA Replication Machinery Family AT1G08840 38.710 2.99e-25 112