Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00956 ATGCTCGCGGCGGCTCCGCCACCTTCCGCCGTCACCACCGCCGGAGTCGGCCTCGGCTACGGAATCGCCATCGCCGTGAGCATCCTCGTCCTCATCTCCACCATCATGCTCGCCTCCTACGCCTGCGTCCGCATCAAGGCCGCCGCCTCGCGCCTCCACGCCTCCGCCCGAAGCGCCGACGGCGAGGACAGCTTCCACGGGGCAGGGCCCGTGGTCCTGGGCCTGGAAAAGCCCGCCATCGAGGCCTGCTGCCCGACGATCGTGATCGGCCAGAGCGGGCGGCTGCCGAGGCCCAACCACGGCCCCTGCGCCATATGCCTGTGCGAGTACCTCCCCGAGGAGACCGTGCGCTGCGTTCCTGACTGCCGCCACTGCTTCCACGCTGTTTGCGTCGACCAGTGGCTCCGATTGAGCGCCACGTGTCCCCTCTGCCGGAGCTCCCCCGCGCCCTCGCCGCTCTCCGACCTCCTTCCGCTGGCTTTCCATGCCAGGTGA 495 0.703 MLAAAPPPSAVTTAGVGLGYGIAIAVSILVLISTIMLASYACVRIKAAASRLHASARSADGEDSFHGAGPVVLGLEKPAIEACCPTIVIGQSGRLPRPNHGPCAICLCEYLPEETVRCVPDCRHCFHAVCVDQWLRLSATCPLCRSSPAPSPLSDLLPLAFHAR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00956 164 SMART ring_2 103 144 IPR001841 -
Pste3g00956 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 151 IPR013083 -
Pste3g00956 164 SUPERFAMILY RING/U-box 102 148 - -
Pste3g00956 164 CDD RING-H2_EL5-like 103 145 - -
Pste3g00956 164 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Pste3g00956 164 Pfam Ring finger domain 103 145 IPR001841 -
Pste3g00956 164 PANTHER RING-H2 FINGER PROTEIN ATL67 12 154 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00956 Pste-Chr3 6041438 6041932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00956 14 164 C3H Transcription Factor Family AT5G07040 62.581 4.22e-59 179