LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g00946	GTTACTGGTTCATGTATATATAGGGAAAAACGAAAACATTTTGGTTGAGAAAGTAAGATGGATGAATTTGCGTGCATGAGGGACTGGGATTTCGAGGCTATAGTGAGAGGAAGCAGCAGTGGTGAAGGCAGCGACCCTCATCAGTTTTCTTATTTCTTCTCCCAACAAGATGATCTTCTTGATAGCTTTCCAGAATTCTCAGAAACTACCAGGGTCCTTGATGATTTGGAAGACCTTTACAAACCCTTCTACCCTCACACCCTAACCCTACCCCTACCCATACCCATGGAAATGGAACCCCAACAATCAGAAGACAAAGTAATGGGTACCGGTGGAGCTGTACAAGTACAAGTCCCGGCGCCAGCTTCTAATAAATGCAAAAAAAGCAAGAAGAGGCAGAACAAGAGCGTGGTGAAGCAGGTGACAACAGCAGAAGGTGTGGACGATGCATGGGCGTGGCGTAAATATGGACAGAAACCAATCAAGGGCTCACCATATCCCCGAAGCTATTACAGGTGCAGCAGTTCAAAAGGGTGTTTGGCCAGGAAACAAGTTGAAAGGAGCCACAAAGATCCATCACTGTTTCTCATAACCTACACTGCCGAACACACCCATCCCCACCCAACTCGAAGAAACTCTCTTGCTGGGACCACTCGGAAGAACAATTCCCTGCTTCCACCTCCAACCACCACCACCACCACCACCACCACAACCACTCCTCACTCTTCCTCTTTGCCCATTCAAGACGACGACCCTTTTCTTCATTCCTTCGATGCTTGGATTCCAACCTCAGACCAACTCATTGAACTCGACTCCCAACATTTTGCATTCCCACTCCCTTGACCCTCCATCATCCTGTACATACTTTTATTCTATTCTCCATTTCCATCTTTATTTTCTCTCCACTCTTTACTAATTAATTACTCAATCTTTCATTATTCAATCCCACTACACAAACAATTTTATCCTTCTTTCGCTGCTCTTGTGTGTATTTTTTATCCTTACATCTCATTCTATTTAATTTATCCCATAACTTTCATCTAACTTTGCCATCTAATTTATTTGTAGCATTTTTATTTTTTGGCATGGGTGTAGCATTTAGTATATACACTTATTAAAATGAAACAAAGCATATGTAATAGTACACAAGTTTTATTTTTATTCTATGTTTGATACCCTAGTTTATTTAAAATGTAGCCTCAAG	1204	0.4186	MDEFACMRDWDFEAIVRGSSSGEGSDPHQFSYFFSQQDDLLDSFPEFSETTRVLDDLEDLYKPFYPHTLTLPLPIPMEMEPQQSEDKVMGTGGAVQVQVPAPASNKCKKSKKRQNKSVVKQVTTAEGVDDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSHKDPSLFLITYTAEHTHPHPTRRNSLAGTTRKNNSLLPPPTTTTTTTTTTTPHSSSLPIQDDDPFLHSFDAWIPTSDQLIELDSQHFAFPLP	261

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g00946	261	MobiDBLite	consensus disorder prediction	186	227	-	-
	Pste3g00946	261	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	76	216	IPR044810	GO:0003700
	Pste3g00946	261	SMART	WRKY_cls	128	188	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste3g00946	261	ProSiteProfiles	WRKY domain profile.	123	189	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste3g00946	261	MobiDBLite	consensus disorder prediction	191	227	-	-
	Pste3g00946	261	Pfam	WRKY DNA -binding domain	129	187	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste3g00946	261	SUPERFAMILY	WRKY DNA-binding domain	122	189	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste3g00946	261	Gene3D	WRKY domain	106	190	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste3g00946	261	FunFam	WRKY transcription factor 22	111	182	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g00946	Pste-Chr3	5974249	5975535	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g00946	1	228	WRKY Transcription Factor Family	AT4G23550	47.755	2.19e-53	173

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pste3g00946		WRKY	2.1e-26	CL0274