Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00945 ATGGCATCTTCTTCCAATCCACCATGTGCAGCATGCAAGTTCTTGCGAAGAAAGTGCCAACCTGAGTGCATTTTTGCACCATACTTTCCACCCCACCACCCTCAAAAGTTCGTGAATGTTCACAGAATCTTTGGCGCCAGCAACGTGTCAAAGCTTCTCAACGAGTTGCACCCTCACCAGCGTGAAGATGCAGTGAATTCTCTAGCCTACGAAGCCGAAATGCGCCTTCGAGATCCTGTTAATGGGTGTGTTGGTATTATTTCTCTTCTTCATCAGCAACTTCGCCAGCTTCACATGGACCTTCAGAGCGTTAAGATAGAGCTCTCAAGGATCCAAAGTTTTGGCATGACCAATGGTTATAGTCATGCCACAGCAGTTACCATGGCTGTCAACACCGCTCATCGTATGAGTGATATTCACTGTGATCATGGTAACTGCTATTATAATCAACATCATCCTTATCCTCAATGTGTGTCACAACATTTATTTAGAAACTTTAGTGCAGGAAATAACAATGATGAGACTAATGTGTTGGGTATCAACATTGCTAGTTTGGGACAATTAAGTGAACTTCAGCAGCCTAGTTCTGCTGCTGCTGCTGTTCGTGATGACCCTCAGACTAGAGTTCATTCCTCATAG 639 0.4429 MASSSNPPCAACKFLRRKCQPECIFAPYFPPHHPQKFVNVHRIFGASNVSKLLNELHPHQREDAVNSLAYEAEMRLRDPVNGCVGIISLLHQQLRQLHMDLQSVKIELSRIQSFGMTNGYSHATAVTMAVNTAHRMSDIHCDHGNCYYNQHHPYPQCVSQHLFRNFSAGNNNDETNVLGINIASLGQLSELQQPSSAAAAVRDDPQTRVHSS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00945 212 Pfam Lateral organ boundaries (LOB) domain 8 104 IPR004883 -
Pste3g00945 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 152 - -
Pste3g00945 212 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00945 Pste-Chr3 5968834 5969472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00945 2 212 AS2 family AT1G65620 53.052 6.57e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste3g00945 LOB 1.2e-40 No_clan