Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00909 ATGCATAATGAAGGATTCATAGAAGCTGAATTAATAGCTGTTCAAGCTCTTGTGTCTATGAAACTATCACAAGCCAATGAGAAATGTAAACACATGCTGGAATGTGGAGAAGGGTTGTCACCATTCTTGATACCAATCACAACAAAGAATGAAGATAATCACCTTCTTGATAATAAGAAGCGCACTTACTTAAGCCATTTTGAGGTAGGGTCATCATCATCATCATCATCATCAACAAGACCGATAATGGAGATCCACCATGATGAATCCACCAAAGAGTTGTTTTCTTTGGTAATTACACACCCAAATGAACATAGATCATTGGTGCGTAATCATTACCCTTCATACTTGCCACCACTCGAGAGCATAAAAGAGTATGTTTTAGAATGTGTGAAACCTTGCAAGAAGAAATTGCAATGCAGTGATTTGAAAGTCCATGCAAATAGACTCCTTCTCCATAAGAAAGATGTGGAAAAAAACTTTTTACCCATGTTGAAGAATGACGAAGATATTGAAATGGGAGTAGAAGCACGTGCATATGATATGCATGGCAATAATTATAAAATGGAGTTCAAGAAATGGAGCAGCAAATACTATGTACTCACTCGTGAAGGGTGGAAAAAATTCTTCATGACTCATCAGTTGCATAAAGGGGATGAAGTCACTGCCCCACCACCGTCCGCCGCCGTCGTCGTTCTTACCGGCGTTTATCTCCGGCACAATTTAGAAACTGTTGAGGTTTTGGCTTGTTCCTATTCTTCAATTCCATGTCTTTTTTTATATATAGAAAACAGCATGAATTTTGCTGCATCATTGTGCAGAAGATTGAATGTCAAGGAACTCGTAACAAATGTTCCTGTGTATAGAAGCACCAGTGATGTTTCTGGAGAAGGTTTGAGTTTGGTGTTCAGGCGTTGGGCTACTAAAAAGACTGCTGGTTCCACAAAGAATGGACGGGATTCAAAACCCAAGAACCTTGGAGTGAAGAAATTTGGTGGGGAGAGGGTAATACCTGGAAATATAATTGTTCGACAACGTGGCACTCGATTTCATCCTGGAAACTATGTTGGACTTGGGAAAGATCACACACTCTTTGCATTGAAAGAGGGATGGGTGAAGTTTGAACGGAACAAGCTGACTGGTCGCAAGTGGGTGCATGTTGAGCCTAAGGAAGGTCATGTTCTCCACCCTTTGTATGCAGATGCTTCTGCATCTGAATCAAAAGTTGCTCTCTAAATCTCGCAAGGTTTTCTATGACAGAAATTTTTATCTAGTGACAAAATTCAGCTTATCTTGGCATATCTGAGCTGCTAGATGTTCTATCTGTCTTAATTTATACCATCTTTAATTGAAAAATAAGTCAGTTTTTTTGTTCATACTGTTCTGTTCAAAGCATTGGTTGCTACTTCTGCATGCTGGAGAGTTGCGCCTTTTTTACATTTGTCATATTATGCCTGATTATCAGAACTTTAATTGGTTAGGGAGAGTGTTTTACTGAATTGATTGAATCATGTAGAAATAAGGTTCAAGTTTACTGATCTCTTCAACTGCATTAATGACTGCACTTCTACTTGAAACATATCGTAAAACCTTTTTTGGCTCCATATACCTATACAGGTAGAGATCATGGATCTTATGAGGCTAGACAAGATCCTCTAGATTGACCGTAGGCCCTTCATTTTAAATAAGGTT 1692 0.3883 MHNEGFIEAELIAVQALVSMKLSQANEKCKHMLECGEGLSPFLIPITTKNEDNHLLDNKKRTYLSHFEVGSSSSSSSSTRPIMEIHHDESTKELFSLVITHPNEHRSLVRNHYPSYLPPLESIKEYVLECVKPCKKKLQCSDLKVHANRLLLHKKDVEKNFLPMLKNDEDIEMGVEARAYDMHGNNYKMEFKKWSSKYYVLTREGWKKFFMTHQLHKGDEVTAPPPSAAVVVLTGVYLRHNLETVEVLACSYSSIPCLFLYIENSMNFAASLCRRLNVKELVTNVPVYRSTSDVSGEGLSLVFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGWVKFERNKLTGRKWVHVEPKEGHVLHPLYADASASESKVAL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00909 411 NCBIfam 50S ribosomal protein L27 307 387 IPR001684 GO:0003735|GO:0005840|GO:0006412
Pste3g00909 411 PANTHER RIBOSOMAL PROTEIN L27 271 405 IPR001684 GO:0003735|GO:0005840|GO:0006412
Pste3g00909 411 Gene3D - 128 224 IPR015300 -
Pste3g00909 411 Pfam Ribosomal L27 protein 307 387 IPR001684 GO:0003735|GO:0005840|GO:0006412
Pste3g00909 411 SUPERFAMILY DNA-binding pseudobarrel domain 134 221 IPR015300 -
Pste3g00909 411 Gene3D - 311 407 - -
Pste3g00909 411 CDD B3_DNA 134 222 IPR003340 GO:0003677
Pste3g00909 411 ProSitePatterns Ribosomal protein L27 signature. 339 353 IPR018261 GO:0003735|GO:0005840|GO:0006412
Pste3g00909 411 FunFam 50S ribosomal protein L27 311 402 - -
Pste3g00909 411 SUPERFAMILY Ribosomal L27 protein-like 307 385 - -
Pste3g00909 411 PRINTS Ribosomal protein L27 signature 309 333 IPR001684 GO:0003735|GO:0005840|GO:0006412
Pste3g00909 411 PRINTS Ribosomal protein L27 signature 359 383 IPR001684 GO:0003735|GO:0005840|GO:0006412
Pste3g00909 411 PRINTS Ribosomal protein L27 signature 334 358 IPR001684 GO:0003735|GO:0005840|GO:0006412
Pste3g00909 411 Hamap 50S ribosomal protein L27 [rpmA]. 306 390 IPR001684 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00909 Pste-Chr3 5680331 5686474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00909 108 239 B3 DNA Binding Superfamily AT1G20600 28.358 1.32e-10 59.3