Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00906 ATGGGGTCCATGCCATTTGTTTTCTCTTGGGATGTGATTTGTGCCCCATTTGATGAATCCCAATTGGAAAATTATGATTCCCTTGAACAAGAACAAGAAAATCTTGGAGATTATTTTCATATTAAGGTCAATGTTACACACCAACTATGCTTTATTCAGCCACAGTCACTACAAACCCCTTCAACAATACCCTTTAACCAGTTTCTGTTTCAGAATTGCATGTTTTTACATAGCCAACAATTCTTTGAAAACGGTCCATCATACATGCAAATGTACTTTCCTCACCCAATCATTCCTAATGAATTGATTCACTCAATGATGTCTGAAGTGGCAACTTATGCTAAAGCTGTGCTGCAAAATCCTCGTTTTGGCTTTCATTATGAAAGTCCAAATTTTAGGTTGTTCACTTTGGTTTTGGATATTTTCATTCAGAAGTTATATGATGAGCATGATGATGACATCAGCAACATGATAATGATGGAGTCAATGAGAGAGATGAAAATGGTTCCCACATCAAACACAGCCATTGAGTCTCTTACGAAAGTGAAGCTAGAAGATGGTGCTGTTAAGGAAAGATGCAGTATCTGTTTGAGAGAGTTTGATGAAGGGGTGGAGGTTTCATTAATGCCATGCAAGCATGTGTATCACCATGAATGCCTCATCAAGTGGCTGAAAATAAGTCATATGTGCCCTATGTGTCGTTACCCTATGCCCACTTCAGGGGATCATTAG 732 0.3852 MGSMPFVFSWDVICAPFDESQLENYDSLEQEQENLGDYFHIKVNVTHQLCFIQPQSLQTPSTIPFNQFLFQNCMFLHSQQFFENGPSYMQMYFPHPIIPNELIHSMMSEVATYAKAVLQNPRFGFHYESPNFRLFTLVLDIFIQKLYDEHDDDISNMIMMESMREMKMVPTSNTAIESLTKVKLEDGAVKERCSICLREFDEGVEVSLMPCKHVYHHECLIKWLKISHMCPMCRYPMPTSGDH 243
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00906 243 SMART ringv_2 192 234 IPR011016 GO:0008270
Pste3g00906 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 238 - -
Pste3g00906 243 Pfam Ring finger domain 192 234 IPR001841 -
Pste3g00906 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Pste3g00906 243 SMART ring_2 193 233 IPR001841 -
Pste3g00906 243 SUPERFAMILY RING/U-box 192 239 - -
Pste3g00906 243 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste3g00906 Pste-Chr3 5663508 5664239 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00906 160 238 C3H Transcription Factor Family AT1G18760 33.750 6.97e-16 72.4