Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00896 CTAAGTGCCAACTTGCCGAAAGCCCTAATTTGAGTCGCAATCGTTGAGCCCTTGCAATCTCCAATTTTTCTCTTCATTCCTTCACAAAATAATGGGTGAAGCCATCGAAACTGAAGAAAGACCCAAATTCAGAGATATCAGACGCTATTTCTGCAAGTTCTGCGGTATCTGCAGGTCCAAAAAAACCCTCATCACATCTCATATCAATTCGCACCACAAGAGAGTGTCTAACTGTTACTCATTCTTGCTTAATGATAAAGATGACATATTACATTCCTTGAAAAATAACTGTTTTGTGGGAGATATAGCTTTATGTTGTGAGTTGATTTTGTTGGCTGTTGCATCGACTGAAGATGCATATTTCGCAGGAAATGTGAAGCATTGGATCCCAGAGAAAGAACTCCAAAATGCGCGAGGCATTGTGTTTGGACTTGATGGATCAGTATCAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCTGTCACACAAAATTGAGAGGCCGTATGTGTGTTCTGTTGAGAATTGTCAGGCAAGTTACCGAAGGAAGGACCACCTGACTCGTCACCTTTTACAGCATCAAGGGATGACTTTTAAATGCCCTGTTGAGAATTGCAGCTCTGAGTTCTCTTTGCAAAGCAACATGAAACGACATGTTGAGGAGATACATGATGAGAGTTCTACCTCCACCAACGACAAAAGTCACAAGCAGCATGTATGCCCTGAAATTGGCTGTGGAAAGGTTTTCAGATTTACATCACAGCTAAAAAAGCATGAAGATTCTCACGGTAGATTTACCTCCTTTTGTTTTCTTTGCGAATTAGCAGAATGTCCATGGATTTTCCTAAGGTGCTTGTTTATTTTGAAAGATGATATGCACAATTTTGAAGAAAGTCTTTATTCTGCAGTTAAACTGGAGTCAATAGATGTGGTGTGCTTAGAGCCTGGTTGCATGAAACGTTTCACCAATGTCCAGTGCCTTCAAGCCCATGTTAAATCTTTCCATCAATATATGACCTGTGACATTTGTGGATCGAAGCAACTCAAGAAGAACATTAAGCGACACCTTCGATCACATGAACCCGGCACTTCATCAGAAACCTTTCCATGTAGTTTTAATGGCTGTAGCTGCACATTCTCAAGAAAATCTAATCTTGATAAGCATAAGAAGGCTGTGCACCTTATGGAAAAACCTTTTCTCTGTGGTTTTCCTGACTGTGGCATGAGGTTTGCTTACAAACATGTGCGAGATAACCATGAAAAAACTGCAAAGCATGTGTTTACCCTTGGTGATTTTGAAAAAGCTGATGAAGAGTTCAGATCAAGGCCAAGGGGAGGAAGGAAGAGAAAATGCCCTACTATTGAAATGTTAGTTAGGAACAGGGTTACCCCACTTAGTGAATTGCAGAGTTTGTTATTCATGCAGGACACTGAGTAAGGTCATTAAGGATGTGTCCTCTTAATAAATGTAAGCAAAATGTAAATTGCATCTGTTGATGGGTATAAGTAAATAAATTGTATACATTTAGGATTACTATTATAGGGCATTTGGTAAATAGGAAAGTTTTTACTTTTTCAAGAATTTTAAGTTGGAAAACTGTTGTTCACTTGTTTTGTA 1624 0.3959 MGEAIETEERPKFRDIRRYFCKFCGICRSKKTLITSHINSHHKRVSNCYSFLLNDKDDILHSLKNNCFVGDIALCCELILLAVASTEDAYFAGNVKHWIPEKELQNARGIVFGLDGSVSGRETSCEAPSRMPLSHKIERPYVCSVENCQASYRRKDHLTRHLLQHQGMTFKCPVENCSSEFSLQSNMKRHVEEIHDESSTSTNDKSHKQHVCPEIGCGKVFRFTSQLKKHEDSHGRFTSFCFLCELAECPWIFLRCLFILKDDMHNFEESLYSAVKLESIDVVCLEPGCMKRFTNVQCLQAHVKSFHQYMTCDICGSKQLKKNIKRHLRSHEPGTSSETFPCSFNGCSCTFSRKSNLDKHKKAVHLMEKPFLCGFPDCGMRFAYKHVRDNHEKTAKHVFTLGDFEKADEEFRSRPRGGRKRKCPTIEMLVRNRVTPLSELQSLLFMQDTE 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00896 450 Pfam Zinc finger, C2H2 type 141 165 IPR013087 -
Pste3g00896 450 Pfam Zinc finger, C2H2 type 210 234 IPR013087 -
Pste3g00896 450 SUPERFAMILY beta-beta-alpha zinc fingers 169 196 IPR036236 -
Pste3g00896 450 SUPERFAMILY beta-beta-alpha zinc fingers 321 379 IPR036236 -
Pste3g00896 450 SUPERFAMILY beta-beta-alpha zinc fingers 134 167 IPR036236 -
Pste3g00896 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 340 370 IPR013087 -
Pste3g00896 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 234 IPR013087 -
Pste3g00896 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 200 IPR013087 -
Pste3g00896 450 ProSitePatterns Zinc finger C2H2 type domain signature. 212 234 IPR013087 -
Pste3g00896 450 Gene3D Classic Zinc Finger 168 209 - -
Pste3g00896 450 PANTHER ZINC FINGER PROTEIN 7 442 - -
Pste3g00896 450 Gene3D Classic Zinc Finger 308 397 - -
Pste3g00896 450 ProSitePatterns Zinc finger C2H2 type domain signature. 143 165 IPR013087 -
Pste3g00896 450 ProSitePatterns Zinc finger C2H2 type domain signature. 342 365 IPR013087 -
Pste3g00896 450 Gene3D Classic Zinc Finger 133 167 - -
Pste3g00896 450 ProSitePatterns Zinc finger C2H2 type domain signature. 373 397 IPR013087 -
Pste3g00896 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 170 IPR013087 -
Pste3g00896 450 ProSitePatterns Zinc finger C2H2 type domain signature. 284 307 IPR013087 -
Pste3g00896 450 ProSitePatterns Zinc finger C2H2 type domain signature. 172 195 IPR013087 -
Pste3g00896 450 SMART c2h2final6 371 397 IPR013087 -
Pste3g00896 450 SMART c2h2final6 141 165 IPR013087 -
Pste3g00896 450 SMART c2h2final6 310 331 IPR013087 -
Pste3g00896 450 SMART c2h2final6 19 41 IPR013087 -
Pste3g00896 450 SMART c2h2final6 210 234 IPR013087 -
Pste3g00896 450 SMART c2h2final6 170 195 IPR013087 -
Pste3g00896 450 SMART c2h2final6 340 365 IPR013087 -
Pste3g00896 450 SMART c2h2final6 282 307 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00896 Pste-Chr3 5596246 5600110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00896 137 400 C2H2 Transcription Factor Family AT1G72050 42.722 1.19e-78 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste3g00896 zf-C2H2 0.0053 CL0361