Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00890 TATATGGGGGAAGAGAGATGGAGGATAGTAAAGTAGAAAAGCAAGATGATAGTAGCCACCACCACCATCACCACAACTCTCTCCTCCAAAACCATAGCACCATCAAGGAAGATCAATCTCCAAGGAACAAAGGAAATATTGGTGGTGATAGGTTGAAGAGAGATGAGTGGAGTGAAGGGGCTGTGTCAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCTTAGAAATAGAGCCAAACTCAAAGGCCATGATTGGGAAGATGTTGCAAAATATGTCTCAAATAGAGCAAACTCCACCAAATCACCAAAGACACAAACTCAGTGCAAGAACAAGATTGAGTCCATGAAGAAAAGGTACAGATCAGAGTCTGCTACTGCTACCTCTGCTGATGCTTCCTCTTGGCCTTTGTATAATCGCCTTGATGTTCTTCTGCGTGGCACAGGACCAATTTCTTCATTGCCACCACCACCAATTGCAACAACAACACCAACAATAACAATAGCACCTTCTCAATCACCAAATGGTGCCAATAATAACAACCAAGCTTTGGTGTTATTGGAATCTCCTTCACTTGCTGTGTCACAACCACTTCTCCCACTTCCTTCTCTGGCTCCTCCTCCACCTCAAGCAATTGCACAAAACTCACATGAGTCCAATGATGGGTTAGGAGCCAAGTCATCTGAGCATGTGTCTAACAAGAATCCAATGGACTCAGATAGTAGCACACCTGCTCTATACAGTGAGAAGGAGAAGGTGATAAGATGCAACAAGAGGAAGATGAAGAGTGAGAACAACAACAAGAGGAAGAGAAGGAACAATGATAATAATAATAATAATAATAATGAAGACATGGAAATAGCAGAGAGCATAAGGTGGCTAGCAGAAGTGGTGGTGAGGTCAGAACAAACAAGAATGGACACAATGAAAGAGATTGAGAGAATGAGAGTTGAAGCTGAGGCAAAGAGGGGGGAAATGGAGCTTAAGAGAACTGAAATCATTGCCAATACTCAACTAGAGATTGCTAGGATCTTTGCA 1037 0.4301 MEDSKVEKQDDSSHHHHHHNSLLQNHSTIKEDQSPRNKGNIGGDRLKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKYVSNRANSTKSPKTQTQCKNKIESMKKRYRSESATATSADASSWPLYNRLDVLLRGTGPISSLPPPPIATTTPTITIAPSQSPNGANNNNQALVLLESPSLAVSQPLLPLPSLAPPPPQAIAQNSHESNDGLGAKSSEHVSNKNPMDSDSSTPALYSEKEKVIRCNKRKMKSENNNKRKRRNNDNNNNNNNEDMEIAESIRWLAEVVVRSEQTRMDTMKEIERMRVEAEAKRGEMELKRTEIIANTQLEIARIFA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00890 340 MobiDBLite consensus disorder prediction 204 240 - -
Pste3g00890 340 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 27 339 IPR044823 -
Pste3g00890 340 MobiDBLite consensus disorder prediction 148 174 - -
Pste3g00890 340 MobiDBLite consensus disorder prediction 158 174 - -
Pste3g00890 340 MobiDBLite consensus disorder prediction 1 48 - -
Pste3g00890 340 MobiDBLite consensus disorder prediction 1 18 - -
Pste3g00890 340 Coils Coil 303 323 - -
Pste3g00890 340 MobiDBLite consensus disorder prediction 192 278 - -
Pste3g00890 340 Gene3D - 51 116 - -
Pste3g00890 340 FunFam Trihelix transcription factor ASIL2 51 116 - -
Pste3g00890 340 Pfam Myb/SANT-like DNA-binding domain 48 137 IPR044822 -
Pste3g00890 340 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00890 Pste-Chr3 5530699 5533374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00890 42 338 Trihelix Transcription Factor Family AT3G14180 25.656 4.90e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pste3g00890 Myb_DNA-bind_4 1.6e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00890 3 5530699 5533374 Pste3g00890 3 5530699 5533374 ECH