Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00878 ATGGCTTCTTCCTCTATCAAGCACACTCACCACCTTAACCGAACCAAACTCTTCATGGAAGAAGAAACCCTTTTGAAGAACCATCACTATCCCAAACTCATAAGGATACGCGTTGCCGACGCCGACGCCACCGACTCCTCCAGCGACGACGACGACCCCTCCGTGTCCTCCACGCGCCGCCGAGTCAAGAACTTCGTCAACGAGATTACCATCCAGGGCAGAGGGGGCGTTTCCAAGAAAAGAAGGTTCAAGTCCGGTGCGGGGGCTCGGGCGAGTCGGCGACGTGCGGGAGGGAGCAAATTCCGCGGAGTGAGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATAAGAGACCCATCCCGCGGCGTGCGGGTGTGGTTGGGAACCTATGACACGGCGGAGGAAGCGGCCATTGTGTACGACAACGCTGCCATTCAGCTGCGTGGCCCTGACGCGCTCACCAATTTCATTAGGCGGCCACTGGAGAATAAAAAAATCAGTGAGGAGTATAGCAGCAAGCATTTACATTCCCCCACTTCGGTTCTTGGATGCTGTTGGGTCTCGGAGTCCGTAACCGAAACTACAAAGTCAAATGAGTGCGAATATTCATGTGTTTTGGTTTCGGAGGAGGAGGAGGATAATATGTTGAAATGGGACTCAGTGTTTGAGATTCCTAATGATGTGGTATTTAACTTTGAAAGCACCTTGGATATGTTTGAGAGTGAGAGTGAGAGTGGAATATTCTTGGGGGATGATTTTAATTTCACAGCAAGTTTTGTTAATGATAATTTAGATTTGGGGTTTACAAGTTGGCACATAGAGTGTGATACTTTCCAAGACATTGGGGATTTGTTTGTTTGGGATCCCCTTCTCGCCCTTTGA 882 0.5091 MASSSIKHTHHLNRTKLFMEEETLLKNHHYPKLIRIRVADADATDSSSDDDDPSVSSTRRRVKNFVNEITIQGRGGVSKKRRFKSGAGARASRRRAGGSKFRGVRQRPWGKWAAEIRDPSRGVRVWLGTYDTAEEAAIVYDNAAIQLRGPDALTNFIRRPLENKKISEEYSSKHLHSPTSVLGCCWVSESVTETTKSNECEYSCVLVSEEEEDNMLKWDSVFEIPNDVVFNFESTLDMFESESESGIFLGDDFNFTASFVNDNLDLGFTSWHIECDTFQDIGDLFVWDPLLAL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00878 293 Gene3D AP2/ERF domain 99 158 IPR036955 GO:0003700|GO:0006355
Pste3g00878 293 MobiDBLite consensus disorder prediction 76 100 - -
Pste3g00878 293 Pfam AP2 domain 99 149 IPR001471 GO:0003700|GO:0006355
Pste3g00878 293 FunFam Ethylene-responsive transcription factor 2 100 158 - -
Pste3g00878 293 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 186 - -
Pste3g00878 293 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Pste3g00878 293 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Pste3g00878 293 CDD AP2 100 156 IPR001471 GO:0003700|GO:0006355
Pste3g00878 293 MobiDBLite consensus disorder prediction 77 100 - -
Pste3g00878 293 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Pste3g00878 293 SUPERFAMILY DNA-binding domain 99 156 IPR016177 GO:0003677
Pste3g00878 293 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00878 Pste-Chr3 5453220 5454101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00878 1 293 AP2-EREBP Transcription Factor Family AT4G23750 39.943 7.57e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste3g00878 AP2 3.5e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01933 1 6011478 6012305 Pste3g00878 3 5453220 5454101 PCT