Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00866 ATGTGTTCGGGAGAGAAGAAAAGAGAGGGAACTGTTGTATCGTTTAGAGAAAAGGGTGTCATAAAGCCAAATCAACCTTATCGTTGTAAGGTTTGTGGGAGAAAGTTTTATACCAATGAAAAGCTTGTTAACCATTTCAAGCAACTGCATGAGCGGGAGCATGTGAAAAGGATGAACCAGATAGAGTCTGCTAGAGGGAACAGAAGAGTGAAGTTGGTAGGTAAGTATTCTATGAAAATGGAGAAGTATAAGAAAGCTGCAAGTGATATTCTCACTCCTAAAGTGGGCTATGGTTTGGAAGATGAGCTCAAACGGGCTGGGTTTTGGGTTCGAACTGTGTTGGATAAGCCACAAGCTGCAGATAGAGCATTGCAAAGTCACATGGTGGATGTCATGGATCATAGGCGGGTTGAGTGTGTGGTCCTTGTGTCTGATGATTCTGATTTTGTTGATGTTATAAAAGAAGCAAAGCTGCGATGTCTGAAGACGGTTGTCATTGGGGATATTGATGATGGTTTCTTGAAGAGGACTGCTGATACTGCATTTTCTTGGGAGGAGATTCTGATGGGGAAGGCTAAAAAGCAAGCTGTTTCAGTTGTGAAAAACTGGAAGGATCGTGACATCTTAAGGACACTAGAAAGCAAAATGAACTTATTGTGTATCTTTTCAATTGATGTTTCTAGTGAAGGAATGTCAAGTGAAGCAACATACTGGTGTTACACATGCAGGCAGCCAATCTGCCTTGCAAGGAGGGGTGCCATTTGCCCTTACTGTGATGAAGGCTTCTTGCAAGAACTTAATGAACTGCAAGGAGTTATGGAGCAAAGAGGTTCTGATCCAAGAATTGGGCGTCGAGACGTCATTGATAACAATATGAGGCAGAGAATGGGTGGAAGATACATAAACTTTGGTGTTAGGAGGTCTGGTTCTACTTCTATCCCTCTTCGTGAGCACACTCGAGGTGTGCTTATATTTCCTAGTCAAGAGGTGGCTTCAGATCTGGAAGGACTCTACATTACAAATGAGCAGCTTGGTGCGTCACAATCTTCAATTGATGCAATGCCAACTATTAAGATCACACATGAACACCTCTACTTTGATCTAGAATGTCCAGTTTGTATAGAAAGATTTGAAGTGGGTGCTGAGGCCAGGAAGATGCCATGTGACCACATTTACCACTCAGACTGTATTGTTCCATGGTTAGTTCAGCATAACTCGTGTCCTGTTTGCCGTGGTAAGCTGCCACCTGAAGGACATGCCAGTTCTCATGGTAGTCTAATTTGGGGAAGAAGGAATGCCAATGGTAATAGTAACAATTATATCTATAGGGGCTGGGAGAATAGACAATTGAACCATGGATGGAGAAATGTACTATCGTTTTTGAATTTTTGTGGCCAAGCCTTTCTTCTTATTCAAATACTTAATCATTTGTGCTGA 1437 0.421 MCSGEKKREGTVVSFREKGVIKPNQPYRCKVCGRKFYTNEKLVNHFKQLHEREHVKRMNQIESARGNRRVKLVGKYSMKMEKYKKAASDILTPKVGYGLEDELKRAGFWVRTVLDKPQAADRALQSHMVDVMDHRRVECVVLVSDDSDFVDVIKEAKLRCLKTVVIGDIDDGFLKRTADTAFSWEEILMGKAKKQAVSVVKNWKDRDILRTLESKMNLLCIFSIDVSSEGMSSEATYWCYTCRQPICLARRGAICPYCDEGFLQELNELQGVMEQRGSDPRIGRRDVIDNNMRQRMGGRYINFGVRRSGSTSIPLREHTRGVLIFPSQEVASDLEGLYITNEQLGASQSSIDAMPTIKITHEHLYFDLECPVCIERFEVGAEARKMPCDHIYHSDCIVPWLVQHNSCPVCRGKLPPEGHASSHGSLIWGRRNANGNSNNYIYRGWENRQLNHGWRNVLSFLNFCGQAFLLIQILNHLC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00866 478 Pfam Ring finger domain 369 411 IPR001841 -
Pste3g00866 478 Gene3D Classic Zinc Finger 3 89 - -
Pste3g00866 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 417 IPR013083 -
Pste3g00866 478 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 8 216 - -
Pste3g00866 478 FunFam E3 ubiquitin-protein ligase RING1-like 336 417 - -
Pste3g00866 478 ProSitePatterns Zinc finger C2H2 type domain signature. 29 50 IPR013087 -
Pste3g00866 478 SUPERFAMILY RING/U-box 350 417 - -
Pste3g00866 478 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 55 IPR013087 -
Pste3g00866 478 ProSiteProfiles Zinc finger RING-type profile. 370 411 IPR001841 -
Pste3g00866 478 CDD PIN_LabA-like 37 168 - -
Pste3g00866 478 SMART c2h2final6 27 50 IPR013087 -
Pste3g00866 478 Pfam NYN domain 99 167 IPR021139 GO:0004540
Pste3g00866 478 SMART ring_2 370 410 IPR001841 -
Pste3g00866 478 SUPERFAMILY beta-beta-alpha zinc fingers 23 53 IPR036236 -
Pste3g00866 478 CDD RING-H2_RNF126-like 369 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00866 Pste-Chr3 5404732 5406972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00866 18 213 C2H2 Transcription Factor Family AT4G12240 67.857 3.89e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste3g00866 NYN 2e-06 CL0280