Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00858 CAACCTTTTTCCAAGAACAACAAAAACCTCAATCTCAGAGCTTGTAACCTGTTTCAATGAGCATGTTAGGCCTTAGAGACCTAGTTCTCATAACTCCAACTCCTTCTTCCCTTCACCAAGGCCAACCCATTTCAGAAAACCACACTCCCAATCTCCCTCTTCCTTCTTCTGCTGCTCTTAGTGTTGGTTTTGGCATTTTTCCTCTCCTCACTGCCACACCATGTGTGCCACACAACAATGAGGTTCAAGAGTGTGGTGCTAGTGCTAGTGCTAGTGCTAGTGGTGGTGGTGGTAACATCACCACCACCAACTATTGGAACCTTAAGATGTGCCAAGAGGTTAATCCTCCAAAGAAGGGTGTGAGTGTGATCAATGTTGATCATGATCAAAAGGGTGTGATGGAGAGTGAGGAAAACGGTGTCTATGGTCCTGACTTTAGGGTGTGCCAAGATTGTGGCAATAGGGCTAAAAAAGATTGCATTTTTAGAAGATGCAGGACTTGTTGCAAGGGACGTGGGTATGATTGTAGCACCCACGTGAAAAGCACATGGGTGCCCTCACTTCGCCGCCGCGAACGGGAGTTCGCAACGGCAACATTAGTTACTTCAGGTGGCGGCGGTGGTTGTGGCAGCGGTGGTAAAAGGCCTAGAGCTATAGTGGGGTCATCACAAAATGCCACTGCAACTTCTCATAGTTCCAACTCTAATGCTACAACACCTAAGAGCTTAGCTACTAGCTCTTTTCACCAAGATGCAAGTTTCAAGCAATGTTTACCCGGTCATGTTCGTGCACCTGCAGTGTTCAAGTGCCATAGGGTTTCAGCCATAGGGAATGGTGAAGATGAATTTGCATACTTGGCCACAGTTCATATAAGTGGCCATGTGTTTAAGGGGTTTCTCTATGACCATGGTGTTGATCATGATGGCAAAACTGCAAATTCAGTGCCTTGTGTTTCGGAACTGCAACTTGGAAACAATTGCAGTGGAAAAAACAGGGAATGTTCTTCTTCTGCTATTGGGGTTGTTCCAACCAACAATAATGCATCATCATCATACCCTGCTTCTGCAAGTTGAACCTTGCTTAGAGGTGATGGATGAGTTTGGTGAACTCCGAAGGATCATTTTGCAATTTTTTCTGGGAAAACTACGTGCATGCTAATTAAAGTGGTCTTGTGTAAATTTCTCTTAAAAAATGTTTATATGCACACATAAAGCTGATGGCCACTGTTAAATTTCTTGCACCATTGGGGACATTGAGAGATTTCTTGCACCACTGTTAAAAAAAAGTGTTAT 1292 0.4427 MSMLGLRDLVLITPTPSSLHQGQPISENHTPNLPLPSSAALSVGFGIFPLLTATPCVPHNNEVQECGASASASASGGGGNITTTNYWNLKMCQEVNPPKKGVSVINVDHDQKGVMESEENGVYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSLRRREREFATATLVTSGGGGGCGSGGKRPRAIVGSSQNATATSHSSNSNATTPKSLATSSFHQDASFKQCLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDHDGKTANSVPCVSELQLGNNCSGKNRECSSSAIGVVPTNNNASSSYPASAS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00858 338 MobiDBLite consensus disorder prediction 199 224 - -
Pste3g00858 338 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 94 321 IPR007818 GO:0003700|GO:0006355
Pste3g00858 338 MobiDBLite consensus disorder prediction 184 224 - -
Pste3g00858 338 NCBIfam putative zinc finger domain, LRP1 type 129 171 IPR006510 -
Pste3g00858 338 NCBIfam LRP1 C-terminal domain 239 286 IPR006511 -
Pste3g00858 338 Pfam Domain of unknown function (DUF702) 129 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00858 Pste-Chr3 5354531 5363008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00858 1 320 C2H2 Transcription Factor Family AT5G12330 40.308 3.51e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pste3g00858 DUF702 4.9e-54 No_clan