Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00856 AGAACCGTAAAAATTCTGAACAATGAAAATTACAAAGAAATCTCCCTCAAACTTAGCCTCAGTGTGAACACCATTGAAGAGACAACCAAAGTTCTCTTCAAGTATTCTCTCCAGGAAGTTCAGAATCTTTTACATTTTCTTTATGCATGGAATAATATTATGAAACTACCTGGTTACAAGACTGAAGTTGGGGAACAGCAGAAGCAAAGTGAACTTGAGATGTCAAGTGGAACAAGGTACTACTGGTGTTATACATGCAGGCAGCCAACCTGGCTTGAAGGGAGGTATGCCAGTTGCCCTTACTGTGATGGAGGCTTTGTGCAAGAACTCAATGAGCTGCTACGCCAACACGGCTTTTCATATCGAATGGAAGATTTGCATCAAATGCCTGACATTATGGATGCTGTTAGAGCAGTCATGGAGAGAAGAGTTCCTGGATTAAGAATTGGAATGAGAGAGGCTGTGGCCATTGATCATATCATGAGGCAGAGAATGGATGGTAGGTACACAAACTTTGATGTTAGAAGGAGCTTTGGTTCCACCCCTCTTCCTTATCAAACTGTGGGTGGCTATAGCACTGGTCCTTATCAGGCCTTTCATGGTCAACCTCCAGGATTCACCATGTCCAACACTAGTCCTAGAGGTTCTCATAGGCATGATGATTTTGGTGAGGACTTTCTTGATCCTGAATTGGAAGGCTTCTTTGAACCACATATTTCAAATGACACACTTGGTCCTCCTCCTGCAACCAGCTCTTCAATAGGGGCAATGCCAACTATTAAAATCACAAATGAGCACCTTCGGTCTGATTCAGAGTGTCCAATTTGTAAAGAAACATTTGAACTTGGTTCTGAGGCAAGGATGATGCCATGCTGCCACTTTTTCCACTCAGATTGTATTGTCCCATGGTTAGTTGAGCATAACTCTTGTCCTGTTTGTCGTGTTGAGTTGGCACCTCAAGGAGATGGTAATTTGCCTGGTGGTCAAACTTCGGGAAGAAGAAATAGTAACGACAATGATAGTGGTGATAATGGTACTAACAATGATAACAGAACTATAAATAACTTAGAAGCTTTCACCTTGGTGCATAGGATGTGTTTGAGAGATAAGGAATCAAAGGGGAAGGAAAGAATAGTCAGAATTCTGAACAGTGAAAATTACATAGAAATTTCCCTCAAACTTAGCCTCGCCTCTAGTGAAAGAGAAAGGATGTCCAGTGGAACAACATACTGGTGTTATACATGCAGGCAGCCAATCTGGCTTCATGGGAGGGATGCCATTTGCCCTTACTGTGATGGAGGCTTTGTGCAAGAACTCAATGAGCTGCTATGCCAACACGGCTTTTCATTTGGAATGGAATATTTGCATCAAATGCCTGACATTATCGATGCTGTTAGAGCAGTCATGGAGCAAAGAGGTTCTGAGTCAAGAACTGGAATTAGAGAGGCTGTTGATAATTTCATGAGGCAGAGAATGGCTGGAAGGTACACAAACTTTGATGTTAGAAGGAGGTCTGGTTCCATCCCTCTTCCTGATCAAACTTTGGGTGTCTATAGCACTGGTCCTTATCTGATCGTTCGTGGTCAACCTCCAGGGTTCACCATGTCCAACACTGGTCCTAGAGGTTCTCATAGACATGTTGATTTTGGTGACTACTTTCTTGGTCCTAGATTGGAAGGCCTCATTGAACAGCACATTTCAAATGACAGGCTTGGTCCTCCTCCTGCGTCGCGCTCTTCAATCGAGGCAATGCCAACTATTAAAATCACAAATGAGCACCTTCAGTCTGATTTACACTGTCCTGTTTGTAAAGAAACATTTGAACTTGGTTCTGAGGCAAGGATGATGCCCTGTTGCCACATTTACCACTCAGATTGCATTGTTCCATGGTTAGTTGAGCATAACTCTTGTCCTGTTTGTCGTGTTGAGTTGCCACCACCTCAAGGACATGGTAGTTCACGTGGTGGTCGAATTTCGGGACGAAGAAATGGTAATGACAATGTTAGTGGTAGTGACAATGATATCGACAGGGGAAGGAATAGACATATGAATAATGGAAGGAGAAATTTTCTGTCATTTTTGTGGCCATTTCGGACTTCTAGTTCAAACGTATCCAAACACAGCCTTAATCATTCTGCAGAAACTGAGGAAGCTACTCTTCTATGTTTTTGGCCATATCAA 2181 0.4269 RTVKILNNENYKEISLKLSLSVNTIEETTKVLFKYSLQEVQNLLHFLYAWNNIMKLPGYKTEVGEQQKQSELEMSSGTRYYWCYTCRQPTWLEGRYASCPYCDGGFVQELNELLRQHGFSYRMEDLHQMPDIMDAVRAVMERRVPGLRIGMREAVAIDHIMRQRMDGRYTNFDVRRSFGSTPLPYQTVGGYSTGPYQAFHGQPPGFTMSNTSPRGSHRHDDFGEDFLDPELEGFFEPHISNDTLGPPPATSSSIGAMPTIKITNEHLRSDSECPICKETFELGSEARMMPCCHFFHSDCIVPWLVEHNSCPVCRVELAPQGDGNLPGGQTSGRRNSNDNDSGDNGTNNDNRTINNLEAFTLVHRMCLRDKESKGKERIVRILNSENYIEISLKLSLASSERERMSSGTTYWCYTCRQPIWLHGRDAICPYCDGGFVQELNELLCQHGFSFGMEYLHQMPDIIDAVRAVMEQRGSESRTGIREAVDNFMRQRMAGRYTNFDVRRRSGSIPLPDQTLGVYSTGPYLIVRGQPPGFTMSNTGPRGSHRHVDFGDYFLGPRLEGLIEQHISNDRLGPPPASRSSIEAMPTIKITNEHLQSDLHCPVCKETFELGSEARMMPCCHIYHSDCIVPWLVEHNSCPVCRVELPPPQGHGSSRGGRISGRRNGNDNVSGSDNDIDRGRNRHMNNGRRNFLSFLWPFRTSSSNVSKHSLNHSAETEEATLLCFWPYQ 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00856 727 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
Pste3g00856 727 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 533 645 - -
Pste3g00856 727 MobiDBLite consensus disorder prediction 324 351 - -
Pste3g00856 727 ProSiteProfiles Zinc finger RING-type profile. 600 641 IPR001841 -
Pste3g00856 727 SMART ring_2 600 640 IPR001841 -
Pste3g00856 727 SMART ring_2 273 313 IPR001841 -
Pste3g00856 727 FunFam E3 ubiquitin-protein ligase RING1-like 563 647 - -
Pste3g00856 727 MobiDBLite consensus disorder prediction 323 351 - -
Pste3g00856 727 CDD RING-H2_RNF126-like 272 314 - -
Pste3g00856 727 MobiDBLite consensus disorder prediction 644 683 - -
Pste3g00856 727 SUPERFAMILY RING/U-box 580 647 - -
Pste3g00856 727 CDD RING-H2_RNF126-like 600 641 - -
Pste3g00856 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 563 648 IPR013083 -
Pste3g00856 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 320 IPR013083 -
Pste3g00856 727 SUPERFAMILY RING/U-box 254 320 - -
Pste3g00856 727 Pfam zinc-ribbon 408 439 IPR039525 GO:0061630
Pste3g00856 727 FunFam E3 ubiquitin-protein ligase RING1-like 237 320 - -
Pste3g00856 727 Pfam Ring finger domain 599 641 IPR001841 -
Pste3g00856 727 Pfam Ring finger domain 272 314 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00856 Pste-Chr3 5342812 5354793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00856 570 698 C3H Transcription Factor Family AT1G68180 38.346 3.08e-24 100