Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00855 TGTGATTGTGAAATTGAATTGTGCTAATGGGTGACACAGATGTTGGTGAAGTAGCAGCCCCAAAGAGGGGAAGGGGAAGAAAGGCCCTGAAAGAGAAGGCCAACATCATTTCGCCATCATCTGATGAGGGAAATGTTCCCTCTAAGAAACAGCAGCAATCTTTCGAGAAAGAATTGCTCGAGATGCAGGAAATGCTGCAGCAGATGCGCCTCGAGAAGGAGAAGACGGAAGAGCTGTTGAAGGCCAAAGATGAGGCTCTCAAGCAGAAGGACCAAGAGCTGAAAAAGTTGCACAAGTTGAAGGAGTTTAAACCTACCATGAATTTTCCTGTGTTGAAAGATAATGACCAAAAGAAGGACAAGAAGAAGGGGTGCTCTGAGACGAAAAGGCCTTCTCCACCTTACATTTTGTGGATGAAAGACCAATGGAGTGAGATCAAGAAATCGAGCCCAGAGGCAGAATTTAAGGAAACTTCTAACATGCTGGGGGTTAAATGGAAGACTGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGAGAAATACCATGCTGAGAAAGAAGCTTATTTGCAAATAATTGCAAAAGAAAAACGTGAGACTGAGGCAATGAGGTTGTTGGAAGAGGAGCAGAAGCAAAGGACTGCCATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGACGGAAAAAGAGGGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTTGTTCACAAATGATAGGCGAGCAGCTCTTCTTGCTGAGAACAAGAATTTCTTGGAGGTTCCAAAGATCACAGCTGAAGAGTGGAAAAACATGACTGAAGAACAAAAGAGACCCTATGAAGAGATGGCAAAGAAGAACAGAGAGAAATATGCCCTGGAAATGGAGGCTTATAAGCAGAAGAAAGATGAGGAAGCTGCTCATCTCATGAAGGAAGAGGAGGAGCATACGAAGCTTCAGAAACAAGAAGCCTTGCAACTGCTGAAGAAGAAGGAGAAAACTGAAAATATAATCAAGAAAACAAAACAGAAGAAGAAACAAAACAAGGAAGACAAGAATTCTGATCCAAACAGACCTAAGAGGCCTCCATCCTCATTCCTCTTATTCAGCAAAGAAGCTAGAAAAACTTTACAGGAGGAGCGACCAGGAGTGAACACCTCAACTCTAAATGCACTTGTTTCGTTGAAGTGGAAGGAACTAAGCGAGGAAGATAGACAACTCTGGAATGACCAAGCATCCAAAGCGATGGATGTATTCAAGAAGGAATTGGAGGAATACAACAAATCCCTCGCAAGCCAGGAGCAGAAAAGCGAATAATAACAAAATCCCCTTCTACATGTTCAAAATTCTATTGAATATGCTTTATCTTCAAAATGTAGTCGCCACTGATGTTTTACTTCATTTTTAGCTGTAATTTTTCTTTGCACAACAGGGAACCGAATAATTTTTCAATGCAATTGCTTTGGGAACTCGCAATTACAATTGTTTTGAGGCAGAATCTGAACGGTTGCAAAAAAAGTTAACCAGGAAAACCTGCAAAATTCACAA 1580 0.4152 MGDTDVGEVAAPKRGRGRKALKEKANIISPSSDEGNVPSKKQQQSFEKELLEMQEMLQQMRLEKEKTEELLKAKDEALKQKDQELKKLHKLKEFKPTMNFPVLKDNDQKKDKKKGCSETKRPSPPYILWMKDQWSEIKKSSPEAEFKETSNMLGVKWKTVSAEEKKPYEEKYHAEKEAYLQIIAKEKRETEAMRLLEEEQKQRTAMELLEQYMQFKQETEKEGKKNKKEKDPLKPKHPMSAYFLFTNDRRAALLAENKNFLEVPKITAEEWKNMTEEQKRPYEEMAKKNREKYALEMEAYKQKKDEEAAHLMKEEEEHTKLQKQEALQLLKKKEKTENIIKKTKQKKKQNKEDKNSDPNRPKRPPSSFLLFSKEARKTLQEERPGVNTSTLNALVSLKWKELSEEDRQLWNDQASKAMDVFKKELEEYNKSLASQEQKSE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00855 440 Gene3D High mobility group box domain 104 185 IPR036910 -
Pste3g00855 440 MobiDBLite consensus disorder prediction 304 385 - -
Pste3g00855 440 Pfam HMG (high mobility group) box 235 301 IPR009071 -
Pste3g00855 440 Pfam HMG (high mobility group) box 119 181 IPR009071 -
Pste3g00855 440 Pfam HMG (high mobility group) box 361 429 IPR009071 -
Pste3g00855 440 MobiDBLite consensus disorder prediction 304 343 - -
Pste3g00855 440 Coils Coil 198 218 - -
Pste3g00855 440 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 361 429 IPR009071 -
Pste3g00855 440 Coils Coil 283 353 - -
Pste3g00855 440 MobiDBLite consensus disorder prediction 216 236 - -
Pste3g00855 440 SUPERFAMILY HMG-box 356 437 IPR036910 -
Pste3g00855 440 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 235 301 IPR009071 -
Pste3g00855 440 MobiDBLite consensus disorder prediction 104 119 - -
Pste3g00855 440 SUPERFAMILY HMG-box 222 307 IPR036910 -
Pste3g00855 440 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 38 438 IPR044601 GO:0003677
Pste3g00855 440 MobiDBLite consensus disorder prediction 29 44 - -
Pste3g00855 440 MobiDBLite consensus disorder prediction 99 125 - -
Pste3g00855 440 Gene3D High mobility group box domain 341 440 IPR036910 -
Pste3g00855 440 Gene3D High mobility group box domain 218 311 IPR036910 -
Pste3g00855 440 SUPERFAMILY HMG-box 107 181 IPR036910 -
Pste3g00855 440 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 119 187 IPR009071 -
Pste3g00855 440 MobiDBLite consensus disorder prediction 1 45 - -
Pste3g00855 440 Coils Coil 411 438 - -
Pste3g00855 440 Coils Coil 43 91 - -
Pste3g00855 440 MobiDBLite consensus disorder prediction 216 238 - -
Pste3g00855 440 SMART hmgende2 234 302 IPR009071 -
Pste3g00855 440 SMART hmgende2 360 430 IPR009071 -
Pste3g00855 440 SMART hmgende2 118 188 IPR009071 -
Pste3g00855 440 CDD HMG-box_AtHMGB6-like_rpt1 120 187 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pste3g00855 HMG_box 3.6e-15 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00855 3 5339024 5341272 Pste3g00855 3 5339024 5341272 ECH