Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00821 TGTTCCTCTTCTCTTTTTTTTTTTTTTTTCTGTTTTTAAATTTTTTATTTCTCGTCTTGATGAAGCCCTAGTTCATTCTCTCCGGTTCCGGTTCGGCTCCGGTTTGGTTCCGGTTCTGTTTCGGTTAATTCCACAATGTCCTCGTCCGGCGACGATTCCTTCTCTGGCCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACACTCCCTCAGCGCGGCGACGCCGTTTCCTTCGCGGAGCGCTGCGAAATCTTCGGCGACGGCGGCGAGGTTGGGTTCCGGACGCAACGCGGCGGCGTTCTGTGGGCCGTGCCGGATCCGTCGCAATGCGGCGACGGCGAAGGCGGCGGAAGATCGAAATCCAAGAGTTCGAAGAAGAAGAAGAACAGTGGGATGGTGAACGGAAGCGTGAGTGCGGTTCACCAGCTCCACGCTATGGTCACTCGCAAGTGCGCCAGAATCGACGCTCGCGTCGTTTGCGTTGACGCGCCTCGAGCTGTGGTGCTCGTCGACGTGTATCTGCCTGTTCAGGTGTGGAGCGGCTGGCAATTCCCGAGCTCCGGCTCCGTCGCCGGCGCGGTTTTTCGCCATTTGAGCTGTAATTGGGATGAGCGAAGTTCAATGCTTTCATATCCAGACTATTGTAGGAATACTCATGAAGCAAATGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGATGCAAGCTCCATTCCCGTGTGAGAAATTCTTCAAGGAAAAGACTATTTGAACTTCATGAAATTTTTAAGACACTACCTGGTGTAGGAAAACAGCAGACATTTAATAGTTCAAAGATAATACCTATGGATAACACTTGCAGATCAGGCATTTGGGAAATATCTGATGATATAATAACTAAAATTTTAGCTTCCCTGGGCCCAATGGACCTCACTAGGGTTTCTGCAACATGTCATCATCTAAGATCCTTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCGGGCAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCTTTTGCCTCATCCTTTATATGTCAGTCTCTCAACTGATGATGGCTTTAGTTGCCATGTAAATACTGTATCTGGTGAAATTGTCACTGGGGAAGCTCCCACCATCAAGGACTTTCGTGGAGGAATGTTTTGTGATGAGCCTGGCTTGGGTAAGACTGTAACTGCTCTCTCTCTTATTATGAAGACACAGGGTATATTGGCAGACCCACCAGATGGGGCACAAGTAGTCTGGTGTCAGCATAATGGTAATCACAAATGTGCCTATTATGAGATCAGTGGTAATAACATCACTGGCCGCACTACCTTGGGTAAGAGGGCTGCGTGCCAAGATACTGGTAGAACTAATTATAACCATGAATACTACTCCAAAAGGGCCAGATTGACTTATTCCAATCAGCAAATCACTAAATTTTATGGTTCATGTTCCAGGGAAGAAAGCAAATTACCTGTAGAAGCATGCTTTAAGGAATCTATGCATTCAAATCGGTTCACTAGGAGTTTGAGTCGCATAAAGAAAAATCTACATTTGACATATGAAGAAGCTATGATTTCCACTGAAAGAGAAATTGGTGAAGGATTAATCAAGGCAAAGCATGTATTAAATGTTGCAACTCATGTATCTCAAAACAAGTTGCCTGGGAAGCCTAAAGGTGATCATTTTGAGTACGGTGATACATGGATACAATGTGATGCTTGTCACAAGTGGCGAAGGCTTGCAGACAACATTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGATCCTTTGTATCAGACTTGTAGTGTCCCCGAACAATATTTTCATAATACCTATAAGATAACACACTTGCCAGGTTTTCACTTGAAAGGAACTCGAGGTGGTGATAAACAAAATGTTTCTTTTTTCACTAGTGTGCTTAAGGAGCACTACTCATTGATTAATTCTCAGACTAAGAAGGCCCTAATGTGGTTGTCTGAAATTTCAACAGCCAAGCTTGCAGCAATGGAAACAAATGGAATAAGGGGTCCGTTTTTAAACATTTTTGATGAATCTAATCATGCATGCAACAAAATATTTCAAGCATTTGGCCTCTTAAAGAGTGTAGAGAAAGGTGTGTGCAGGTGGTATTACCCTCAACATCTCAACAATTTGACTTTTGATGTGACTGCCCTTGGCACGGCTCTCCGTGAACCATTAGATTTTGTAAGATTATACTTGTCAAGAGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGGGACTTGGTCAATTAAGGGTTTATGTTTGGACCGATCATCGGAAACCATCTGTGCATTGTCTTGCGTGGGATTATGATGTTGTGATCACTACCTTTAGTCGTTTGAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGTTTTGACACAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGACACACTCTTGGGTCAAGTCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCGTTGATAGCTTCAAATCGATGGATATTGACAGGAACTCCAACACCAAACACTCCTAACAGCCAACTTCCACATCTACAACCTTTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCAGAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAAGCAGAGATGGAGGAAGGAAGGTCTCGTCTTTTAAATTTACTTCACAAATGCATGATTAGTGCTAGAAAGATAGATTTACAAAGCATTCCACCATGCATCAAGAAAGTTGTTTATCTAGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAGTTGGTAATCACTGTACGACGTAATATATTGATGGCTGATTGGAATGATCCATCGCATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAGTTTCGTGGGGCAACCATAAAAAATGTCAGGCTTTCTTGCTGCGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTGGATCATACGTCAGGAGAGTATAACTCCATTAGATATAATCTCTTGTATGGTGGTAACTGTTTCAGGTGCAAGGAATGGTGCCGCCTTCCACTCATTACACCATGTCGGCATCTATTGTGCCTTGATTGTGTTTCTATAGACAATACAAAGTGTACTTATCCTGGCTGTAGTAAATTGTATGAGATGCAGAGTAGACTGCCCCGACCTGATAATCCTAACCCGAAGTGGCCTGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCTTATCTTGTCCAGAGGTTGAAAGCTCTTCAAGGAACCAATGAAGAGACAAGCTTCAATACATACAATAGTAATGATGAGATGCATAAGGAGAATAGCTTCTATCTGCATAGAAGTGACGACAAATCATCAATCCAGAACTGTAGGAGCAGCACTAAGACCAATTTAAACCCTGAGAAAATTCTGATATTCTCCCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGTCCAATGCACTCCAGCAACAAGAAGAAGTCATTAGCCACGTTCCAGCATGATTCAAGTTGTATGGCACTTGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCATCGTATGGGTGCTTCTCGACCTATTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAACAAATGCTGGAGTTTTTACAGGATGCTGATAAATATAGAAGATTGCAGGCTAAGGATTTTGCTGAATCTGAAGATGATAGTGGGGGGCGAGGATATAGATCATTGCATGATTTTGCTGAAAGCAGTTATCTACTGAAACTTAAATCTGTTTATACTAATTCGGAAAGTCCAGAAGGTGTTTGATTGATCAACACCGAGCAAGTACTGACTATTTTACTTTGAGCAAGTCCCGTGGACATCCTTCACGGTTACATACTCCTGAATATGGTTCTACTTTTTGTACATATATTTAAATTGGTTAATCTTATAAGATGGTTCCATATGCATTGGAGAGTGGAAACTATTCTTTTCGAGAAACATAATGGAGCTTGTTTGCCAGTGTTTAATAAAATACTGGAATGGTCTCTGCTTATTCTTTTTGTATAGGATTAAGTCTAGTTGATTTGAAGTGATTTAGTAGCAAGTTTGGATTCAAGAATTCGAACTCAAATAGATTGTCATTGGGGAAAAGAGAATCTTCTCCCCGACCTTTTCTTTTAACAGTGGATAATATTGAAAATACATAGCCCTTGCCC 4448 0.4193 MSSSGDDSFSGHKLCGFLCAVLTLPQRGDAVSFAERCEIFGDGGEVGFRTQRGGVLWAVPDPSQCGDGEGGGRSKSKSSKKKKNSGMVNGSVSAVHQLHAMVTRKCARIDARVVCVDAPRAVVLVDVYLPVQVWSGWQFPSSGSVAGAVFRHLSCNWDERSSMLSYPDYCRNTHEANESIWNLSDCHVLGCKLHSRVRNSSRKRLFELHEIFKTLPGVGKQQTFNSSKIIPMDNTCRSGIWEISDDIITKILASLGPMDLTRVSATCHHLRSLAASVMPCTKLNLFPHQRAAVEWMLHRERNAELLPHPLYVSLSTDDGFSCHVNTVSGEIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLIMKTQGILADPPDGAQVVWCQHNGNHKCAYYEISGNNITGRTTLGKRAACQDTGRTNYNHEYYSKRARLTYSNQQITKFYGSCSREESKLPVEACFKESMHSNRFTRSLSRIKKNLHLTYEEAMISTEREIGEGLIKAKHVLNVATHVSQNKLPGKPKGDHFEYGDTWIQCDACHKWRRLADNIMANSSAAWFCSMNTDPLYQTCSVPEQYFHNTYKITHLPGFHLKGTRGGDKQNVSFFTSVLKEHYSLINSQTKKALMWLSEISTAKLAAMETNGIRGPFLNIFDESNHACNKIFQAFGLLKSVEKGVCRWYYPQHLNNLTFDVTALGTALREPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVGLGQLRVYVWTDHRKPSVHCLAWDYDVVITTFSRLSAEWGPRKRSVLTQVHWFRIILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEEAYGLNQKSWEAGVLRPFEAEMEEGRSRLLNLLHKCMISARKIDLQSIPPCIKKVVYLDFNEEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRGATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDHTSGEYNSIRYNLLYGGNCFRCKEWCRLPLITPCRHLLCLDCVSIDNTKCTYPGCSKLYEMQSRLPRPDNPNPKWPDNWDPDWQSTSSSKVSYLVQRLKALQGTNEETSFNTYNSNDEMHKENSFYLHRSDDKSSIQNCRSSTKTNLNPEKILIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMHSSNKKKSLATFQHDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLEFLQDADKYRRLQAKDFAESEDDSGGRGYRSLHDFAESSYLLKLKSVYTNSESPEGV 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00821 1306 Pfam F-box domain 243 277 IPR001810 GO:0005515
Pste3g00821 1306 SUPERFAMILY F-box domain 234 276 IPR036047 GO:0005515
Pste3g00821 1306 Pfam CW-type Zinc Finger 529 572 IPR011124 GO:0008270
Pste3g00821 1306 Gene3D - 1052 1292 IPR027417 -
Pste3g00821 1306 CDD DEXDc_SHPRH-like 703 880 - -
Pste3g00821 1306 SMART ultradead3 281 850 IPR014001 -
Pste3g00821 1306 Pfam SNF2-related domain 288 924 IPR000330 GO:0005524|GO:0140658
Pste3g00821 1306 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 674 839 IPR014001 -
Pste3g00821 1306 Gene3D - 685 883 IPR038718 -
Pste3g00821 1306 MobiDBLite consensus disorder prediction 59 88 - -
Pste3g00821 1306 ProSiteProfiles Zinc finger CW-type profile. 524 575 IPR011124 GO:0008270
Pste3g00821 1306 Pfam Helicase conserved C-terminal domain 1126 1228 IPR001650 -
Pste3g00821 1306 ProSitePatterns Zinc finger RING-type signature. 1017 1026 IPR017907 -
Pste3g00821 1306 SMART fbox_2 243 283 IPR001810 GO:0005515
Pste3g00821 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 1283 IPR027417 -
Pste3g00821 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 879 IPR027417 -
Pste3g00821 1306 CDD F-box_SF 242 274 - -
Pste3g00821 1306 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1114 1274 IPR001650 -
Pste3g00821 1306 Gene3D - 524 577 - -
Pste3g00821 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 366 IPR027417 -
Pste3g00821 1306 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 72 1255 - -
Pste3g00821 1306 CDD SF2_C_SNF 1131 1238 - -
Pste3g00821 1306 SMART helicmild6 1146 1228 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00821 Pste-Chr3 5071700 5087964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00821 709 1248 RAD5 or RAD16-like Gene Family AT5G22750 25.345 2.38e-41 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste3g00821 SNF2_N 1.9e-96 CL0023