Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00818 GGGTACCTGAACTCCTGTGTCTTATTGGGATTTCTTGCTTTATTTGTGGTAAGGATGATGACCCATGGAGCACGTAACACACATCTTCGGATCACAATTTCCCTAGAGCCCGTCCCTTTTGTAATGGGATTGGAGGGTGCCACAATTGAAAAGTATCCTAAAACTCTCATCGAGTGGATGCTTATTGAAACTTGTGCAATATGTCTTTGTGAATATGAATCCAAAGAGATGTTGAGAAGCATACCTGAATCTAACCATTATTTTCACGCAGATTGCATAGATGAGTGGCTCAAATTGAATGGCACCTGCCCTTTGTGCAGGAATTCTCCTGAGGCATCTTCTACGGCTTCTCTTTTTTCCTCATCCCACTTCCTCAATGTCTTCTCCACAATAGAAACTCTCCTACTCCTACACATTTCA 420 0.4238 GYLNSCVLLGFLALFVVRMMTHGARNTHLRITISLEPVPFVMGLEGATIEKYPKTLIEWMLIETCAICLCEYESKEMLRSIPESNHYFHADCIDEWLKLNGTCPLCRNSPEASSTASLFSSSHFLNVFSTIETLLLLHIS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00818 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 113 IPR013083 -
Pste3g00818 140 ProSiteProfiles Zinc finger RING-type profile. 65 107 IPR001841 -
Pste3g00818 140 SUPERFAMILY RING/U-box 57 109 - -
Pste3g00818 140 Pfam Ring finger domain 64 107 IPR001841 -
Pste3g00818 140 CDD RING-H2_EL5-like 65 107 - -
Pste3g00818 140 SMART ring_2 65 106 IPR001841 -
Pste3g00818 140 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 110 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00818 Pste-Chr3 5060693 5061122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00818 7 121 C3H Transcription Factor Family AT5G07040 39.370 1.89e-24 90.5