Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00790 GAACCCGAGATATCGTGGTTCTCTTCACCTTTTTCCATTTAAATAAATGTATAGGCAAGGGATTAATTAGTCGCTTAAGCACTCTACTAACGTGGGATTGTTCTCATCGCAATCCCATTCCTTTTCCTCTTCCTCCTTCCAAATTCCTTATCGTATTGCGTGTGTCACAAATTGAATTGTGCTGAGGATTCGTTTCTGGAATTGACTGTGTAACCTTTACAGAACTAGTTTCTGACTTCGGATTAGCTTCTCAATGGAGGCGGATTTCGTGATGAATGATATGCTCACACTCACGCAGGACGCTTTTGATGCTAACGATAACGATGATGTGGCTATTGAAGGAGAAAGATGTGGAATATGTATGGATATGGTTATTGATAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTGAGTGATATAAAATTGCGGAATGCTGCTTTATCTTCATTGCTTTAG 547 0.4095 MEADFVMNDMLTLTQDAFDANDNDDVAIEGERCGICMDMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVSDIKLRNAALSSLL 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00790 97 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Pste3g00790 97 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Pste3g00790 97 SUPERFAMILY RING/U-box 9 78 - -
Pste3g00790 97 PANTHER F18C1.6 PROTEIN 27 91 - -
Pste3g00790 97 SMART ring_2 33 71 IPR001841 -
Pste3g00790 97 Pfam Ring finger domain 32 72 IPR001841 -
Pste3g00790 97 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 95 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00790 Pste-Chr3 4895662 4898967 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00790 27 75 C3H Transcription Factor Family AT2G39100 34.615 8.84e-09 48.9