Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00760 CAGACATTTATTTTTTATGTCTCTCTCTGCCACCCAAACAGAGAAAAGAACCAAACAGACCAGATTCTCTTCGAATAGCAAGCCATCAACATACCATCACAAGAAGTGCATGCCCAACTAAAGCTATTGCATAACATTTTCAAAGAGTCTATTAATATGTTCCACACATTTGCATCAGTATAGAATGTATGGCAGTGGCAGAAGGTTTAATTACGAATGTCAGGGAAGAAGTGAAGGTGTGGTGAATGGTGATGGGTGTCCCACAACCTCCAACCCCCTCTCCACATCTGTATCCTCAACAACTTCAGCTTAAACTTTACCAAGCCTTCATATTCTCCATTCCTATACTCTTTTCCATTATTTTGGTTCTCTTGTTTTACTTGTTCTACCTTAAAAGGAGGGCTTCCTCTCTCTCATCACCACCTCTCCACACACTTCCCACTACTGCTAATCCACAAACTACATATCCTTACCCTTCACAACCTTGCCGTTTAGATCTGACACTGCAATTACTGGACAAACTTCCAAGAATTTTATTTGATGAGGATTTAAGAACAAGAGATTCAGTATGCTGTGTTTGCCTGGGAGAATTTGAGGTGAAGGAAGAGGTGTTACAGATTCCTTATTGCAAGCATGTGTTTCACATAAATTGCATAAGTAATTGGCTGCAATCAAACTCCACATGTCCACTTTGTAGATGTTCCATCATTCCCTCTACCAAGTTCCTTAGTACAGCACCACCAATTATATCAGACCCACAGCAGCAAGGTGGTATTTCAGACTCTTCATCACACATCATGACATGGCCTCATCAACAACAAGAAGTTGGTGCTTCCACGAATACTACCGTTTTTCAAGGGAATGATGTATAATGTATTAATTAGATTATAATACTTTTGAAATGAAGGGAGACATTCAAGTGACCTTCGCCACACTATAGTTCTGTATATTCAAAGCCAATAATTTATGAAATAATGAAATGTAG 985 0.3919 MVMGVPQPPTPSPHLYPQQLQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHTLPTTANPQTTYPYPSQPCRLDLTLQLLDKLPRILFDEDLRTRDSVCCVCLGEFEVKEEVLQIPYCKHVFHINCISNWLQSNSTCPLCRCSIIPSTKFLSTAPPIISDPQQQGGISDSSSHIMTWPHQQQEVGASTNTTVFQGNDV 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00760 208 SUPERFAMILY RING/U-box 87 158 - -
Pste3g00760 208 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Pste3g00760 208 CDD RING-H2_EL5-like 109 151 - -
Pste3g00760 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 156 IPR013083 -
Pste3g00760 208 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 78 156 - -
Pste3g00760 208 Pfam Ring finger domain 109 151 IPR001841 -
Pste3g00760 208 PANTHER RING-H2 FINGER PROTEIN ATL16 10 174 IPR044600 GO:0016567|GO:0016740
Pste3g00760 208 SMART ring_2 109 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00760 Pste-Chr3 4754400 4756508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00760 6 206 C3H Transcription Factor Family AT4G10150 35.238 3.21e-35 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00760 3 4754400 4756508 Pste3g00760 3 4754400 4756508 ECH