LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g00742	CTACATTTTCACTTCAAAGGAAGAAGGTGATGAAAAATGGGAAAGTTCATGAGTATTCTTGTTGCTTTTGTTGGAGTTCTAGTTCTTTGTGTTCTGATTCAAGCTCAGGACCAATCAGCATAGATTGTGGAGCTCCTAAAGATGTGAGCTATATTGCGTCAACAGGCATAAATTATATTTCAGATGCAAACTTCACAAATACTGGTGTGAGTGGGATGATAGTATCTGAACTTAGAACTAACCGACAAAAACAGTTGTTAAGACTTAGAAGCTTTCCAGAAGGAAAAAGGAATTGTTACAAAATAAACATCACAAAAGGCTCTAAATATCTAATCAGAGTTGGGTTTTTGTATGGAAATTATGATGGTCAAAATATATTACCACAATTTGATCTTCTTCTTGGGGCTAACTTGTGGGATACAGTGACTATAAACAATGCATCCTTAGACCAATTCAATGAAATCATATATGTACCTCCTCTGGATTATGTACAAATATGTTTGGTTGACACAAGCAATGGGACACCGTTTATATCATACATAGAAGTAAGGAGTTTGAACAATGATACATATGTCACAGAATCAGGTTCATTGGAATATTACTGGCGATGTGATCTAGGTACAACTATGATGTTTATGATCGTTTTTGATTGGACAAAAGAAAATGTTTTGAACACTGACGATTCTATAGTCCAAAACAAGTACCATCCAGCAGCTGTTGTCATGAGCACCACAGTTACACCAGCAAATGCTAGTGCACCATTGATAATAAGTTGGGAGCCAAAAGATCCAACATGGCAATTCTATGCTTACTTGCACTTCATGGAGATTCAAGTGTTAACAAAAAATCAAACAAGAGAATTCAATATTATACGTAATGGTGAATTAAGGCATGAAAATTTGTCTCCAAGATACCTACAAGTTGTCACTGTTTGGAGTGTGTCAGCCTTTAGTGGGAAGGAAATTAAATACTCACTTGAGATGACCCAAAATTCAACCTTGCCTCCCATCATCAATGCCTTTGAAATTTACAAAGTAAAAGAATTCTCACAATCAGATACATTCCAAGTAGATGTTGATATGATTACAACCATCAAGTCAGTTTATGGATTGACAAGAGATTGGCAAGGTGATCCATGTAGCCCTACAGACTACTTATGGGATGGTTTGAATTGTACTTATCCTAGAAATGATTCCCCAAGAATCACAACTTTGAATTTATCTTCCAGTGGCTTGTCAGGAAAGATAGATCCTTCAATTTCAAATCTCATCATGTTAGAGAAGTTGGATTTATCAAACAATAGCTTAAACGGTGAAATTCCTGAATTTCTAGCTCAATTACAACACTTGAAAGTCTTACACTTAGACAAAAATAACCTTTCTGGTACAATTCCATTAGCACTTAGAAAAGGTTCCTTATCACTAAGTGATCAAAGTCAAATTTCATCACAATACACAACAAACCAAGAGTATTCGTTAATGCAATCCAAAAAACAAATATATTCATACTCCGATATCCTTAAAATCACCAACAATTTCAATAAAGTCATCGGTAAAGGAGGATTTGGAACAGTTTATCTAGGCTATATCAATGACACTCCAGTTGCAGTGAAAATGCTTTCTCCATCATGTGTTCATGGCTATCAACAATTTCAAGTAGAGGTTAAACTTCTAATGAGAGTTCATCATAAAAGTTTGACTTCCCTTGTTGGTTATTGTAATGAAGGAAACAATAAGTGTCTTATATATGAGTACATGGCTAATGGAAACTTACAAGAACATCTCTCTGGTAAACATAGCAAAACAAAATTTTTTAGCTGGGAAGATAGACTTCATATAGCAATGGATGCAGCCTCAGGATTGGAGTATCTACAAAATGGTTGCAAACCAACTATTATTCACAGAGACATAAAATCAACAAACATCTTACTAAATGAACACTTTCAAGCAAAACTATCTGATTTTGGTCTATCCAAAATTATTCCATCAGACGGGGGAACTCATGTGTCAACTGTTATTGCTGGTACTCCTGAGAAAAGTGATGTTTATAGCTTTGGTGTTGTTCTTTTGGAAATAATCACAAGTCAACCAGTGATAATAAAGAATCAAGAAAATACTCACATAAGTCAATGGGTTAACTCTTTGGTTGAGAAAGGTGATATCAAGGCCATTATTGACCCTAGGTTAGAAGGAGATTTTGATAATAACTCAGTTTGGAAAACAGTAGAAATAGCAATGACATGTGTGTCTCCAAGTTCCAACAAAAGGCCAACCATAAGTATGATAGTGATTGAACTGAAGGAGTCTTTAGCAATGGAATTAGCTCGAATTAAATATAGAGGTACCTATACAAGAGATTCAATTAATCCCACCACCATAAATTTGAAAAGTGATTTTATTCCC	2402	0.3497	MKNGKVHEYSCCFCWSSSSLCSDSSSGPISIDCGAPKDVSYIASTGINYISDANFTNTGVSGMIVSELRTNRQKQLLRLRSFPEGKRNCYKINITKGSKYLIRVGFLYGNYDGQNILPQFDLLLGANLWDTVTINNASLDQFNEIIYVPPLDYVQICLVDTSNGTPFISYIEVRSLNNDTYVTESGSLEYYWRCDLGTTMMFMIVFDWTKENVLNTDDSIVQNKYHPAAVVMSTTVTPANASAPLIISWEPKDPTWQFYAYLHFMEIQVLTKNQTREFNIIRNGELRHENLSPRYLQVVTVWSVSAFSGKEIKYSLEMTQNSTLPPIINAFEIYKVKEFSQSDTFQVDVDMITTIKSVYGLTRDWQGDPCSPTDYLWDGLNCTYPRNDSPRITTLNLSSSGLSGKIDPSISNLIMLEKLDLSNNSLNGEIPEFLAQLQHLKVLHLDKNNLSGTIPLALRKGSLSLSDQSQISSQYTTNQEYSLMQSKKQIYSYSDILKITNNFNKVIGKGGFGTVYLGYINDTPVAVKMLSPSCVHGYQQFQVEVKLLMRVHHKSLTSLVGYCNEGNNKCLIYEYMANGNLQEHLSGKHSKTKFFSWEDRLHIAMDAASGLEYLQNGCKPTIIHRDIKSTNILLNEHFQAKLSDFGLSKIIPSDGGTHVSTVIAGTPEKSDVYSFGVVLLEIITSQPVIIKNQENTHISQWVNSLVEKGDIKAIIDPRLEGDFDNNSVWKTVEIAMTCVSPSSNKRPTISMIVIELKESLAMELARIKYRGTYTRDSINPTTINLKSDFIP	791

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g00742	791	SMART	serkin_6	501	762	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g00742	791	Gene3D	Ribonuclease Inhibitor	349	475	IPR032675	-
	Pste3g00742	791	PANTHER	OS07G0107800 PROTEIN-RELATED	29	760	-	-
	Pste3g00742	791	SUPERFAMILY	Protein kinase-like (PK-like)	477	754	IPR011009	-
	Pste3g00742	791	FunFam	Leucine-rich repeat receptor-like protein kinase	478	575	-	-
	Pste3g00742	791	ProSitePatterns	Protein kinases ATP-binding region signature.	507	528	IPR017441	GO:0005524
	Pste3g00742	791	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	622	634	IPR008271	GO:0004672\|GO:0006468
	Pste3g00742	791	Gene3D	Phosphorylase Kinase; domain 1	482	575	-	-
	Pste3g00742	791	FunFam	Leucine-rich repeat receptor-like kinase	347	474	-	-
	Pste3g00742	791	SUPERFAMILY	L domain-like	353	459	-	-
	Pste3g00742	791	Pfam	Protein tyrosine and serine/threonine kinase	503	755	IPR001245	GO:0004672\|GO:0006468
	Pste3g00742	791	ProSiteProfiles	Protein kinase domain profile.	501	760	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g00742	791	Pfam	Malectin-like domain	31	336	IPR024788	-
	Pste3g00742	791	Gene3D	Transferase(Phosphotransferase) domain 1	576	770	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g00742	Pste-Chr3	4647623	4653432	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g00742	9	791	Receptor kinase-like Gene Family	AT2G19210	43.986	0.0	707

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Pste3g00742		Malectin_like	2.8e-94	CL0202