Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00637 ATGGCTTTCACATTAGACAGTAGCTTTGAGGAGAATATGGTGTTCACTTTTGAGTCTCAGAAGTCAGTGACAGCACCCTTTCTTACAAAGACATACCATCTTGTTGATGATCCTCTCACTGACCACATTGTGTCATGGGGTGAAGATGAGACAGCATTTGTTGTGTGGAGACCACCGGAGTTTGCCAGAGACCTTCTTCCAAACTATTTCAAACACAACAACTTTTCAAGCTTTGTTAGACAACTTAACACTTATGGTTTCAAGAAAGTAGTTGCTGATAGGTGGGAGTTTGCAAATGAGTACTTCAAAAAAGGAGCAAAGCACCTTTTATGTGAAATCCACAGGAGAAAAACACCACAGCAGCATCACCAACTCTTCCAAGACCACCAACTCTTCCAAGACCAACCACAATCCCAAATTCTTAACCAAGATCAAAACCTATGCTGGCTAGAATCACCACTTCCATCTCCAAAACCAAGCACAGATATTCTAACAAAACTTTCTGAAGACAACCAAAGACTGAGGAGAAAGAACTTCATGCTCTTATCAGAACTCAGTCACATGAAGAGTTTGTACAATGACATCATATACTTCATCCAACACCATGTGAAACCAGCACCCTTTGAGCAAAGAAGCACCAGTGCTATTATTACAAAGCTGGTGGAGTTGGACTCATTGCATGAGTCACCAAATCATAAAAGTTGTAGTGTGGATAAGGCTTTGATTAGTTCTACTGAGGAATCACACAGCTCTGTCAAACTCTTTGGGGTCCCTCTAAGTGGCAGAAAGAGATTTCACCCAGAGAACATTGATTGA 816 0.4118 MAFTLDSSFEENMVFTFESQKSVTAPFLTKTYHLVDDPLTDHIVSWGEDETAFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFKKGAKHLLCEIHRRKTPQQHHQLFQDHQLFQDQPQSQILNQDQNLCWLESPLPSPKPSTDILTKLSEDNQRLRRKNFMLLSELSHMKSLYNDIIYFIQHHVKPAPFEQRSTSAIITKLVELDSLHESPNHKSCSVDKALISSTEESHSSVKLFGVPLSGRKRFHPENID 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00637 271 FunFam Heat stress transcription factor B-4 19 117 - -
Pste3g00637 271 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g00637 271 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g00637 271 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 228 IPR027725 -
Pste3g00637 271 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g00637 271 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g00637 271 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g00637 271 ProSitePatterns HSF-type DNA-binding domain signature. 66 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g00637 271 SUPERFAMILY "Winged helix" DNA-binding domain 25 116 IPR036390 -
Pste3g00637 271 Gene3D - 19 118 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00637 Pste-Chr3 3969401 3971251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00637 11 266 HSF AT1G46264 47.573 1.77e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pste3g00637 HSF_DNA-bind 1.9e-32 CL0123