Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00627 ATGGGCAACTGTTGCTCTCAAGGCAACGGTTCGGACAGCCCGGCCGACGATGCCGCCAACGACAAGGGGGAAACCAACCAACAAAGTAGCAATAATCTCAACAATGACAATAACAATGACACTTCCTCAAACCCTACTACACCACCACCATTGTCGACACCACCATCCACCGTCACTCCACCAACTTCAAAATCCTCAAAACTAGGTCCCATGGGCCCGGTTCTGGGTAAGCCGATGGAGGACGTGAGGGCCTCATACACCCTAGGAAAGGAGTTAGGGAGAGGCCAATTTGGTGTCACACATTTGTGTACAGATAAAACCACAGGTGAACAATTTGCAAGCAAAACCATTGCCAAGAGGAAGCTTGTGAACAAGGAGGACATTGAGGATGTGAGAAGAGAGGTGCAAATCATGCACCACCTTTCAGGTCAACCTAACATTGTGCAACTTAAGGGTGCATATGAAGATAAACAATCCGTTCATTTGGTCATGGAACTTTGTGCTGGTGGTGAACTTTTTGATCGTATCATTGCTAAGGGACATTACACGGAGCGTGCTGCCGCTTCATTGTTGAGAACCATAGTTCAAATTGTTCATACCTTCCACTCTATGGGTGTAATTCATAGAGATCTTAAGCCTGAGAATTTTCTGTTGTTGAGTAAAGATGAAAATGCTCCCCTCAAGGCTACAGATTTTGGTCTATCCGTTTTTTTCAAAGAAGGAGAGACTTTTAAAGACATTGTTGGAAGTGCATATTACATTGCTCCTGAGGTCTTGAAGAGAAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTATGTGGTGTTCCTCCATTCTGGGCAGAATCCGAACATGGTATATTCAATGCCATCCTAAGAGGCCACGTTGATTTTGCAAGTGATCCATGGCCTTCAATTTCACCTGCTGCAAAGGATCTTGTAAGGAAAATGTTAAATTCAGATCCCAAACAAAGACTTACAGCACGCGAAGTTCTAAATCATCCATGGATCATGGAGGATGGAGAAGCACCAGATAAACCTCTTGATAATGCTGTTCTGAATAAGCTCAAACAATTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGATGTCTATCAGAAGAGGAAATCATGGGGTTGAAGGAAATGTTCAAAGGGATGGACACTGACAACAGTGGAACCATTACAATTGAAGAACTGAAGCAAGGTCTTGCAAAGCAAGGAACAAAGCTATCAGAACAGGAAGTTAAGCAACTAATGGAAGCAGCTGATGCTGATGGCAATGGAACCATAGATTACGACGAGTTCATCACCGCAACAATGCAGATGAATAGAATGAACAGAGAAGACCATCTTTACACTGCCTTCCAATACTTTGATAAAGATAACAGCGGGTTCATTACCACTGAAGAACTAGAACAAGCGCTCCGTGAGTTTAACATGCGTGATGGTAGGGACATCAAGGAAATCCTTCAAGAAGTTGATTCAGATAATTTTGTGGCAATGATGAGAAAGGGAAATCCAGAAGCTATGACAAAGAAGAGGCGTGATTCATTGCCTTTGACTTAG 1605 0.4318 MGNCCSQGNGSDSPADDAANDKGETNQQSSNNLNNDNNNDTSSNPTTPPPLSTPPSTVTPPTSKSSKLGPMGPVLGKPMEDVRASYTLGKELGRGQFGVTHLCTDKTTGEQFASKTIAKRKLVNKEDIEDVRREVQIMHHLSGQPNIVQLKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLSKDENAPLKATDFGLSVFFKEGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHVDFASDPWPSISPAAKDLVRKMLNSDPKQRLTAREVLNHPWIMEDGEAPDKPLDNAVLNKLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLAKQGTKLSEQEVKQLMEAADADGNGTIDYDEFITATMQMNRMNREDHLYTAFQYFDKDNSGFITTEELEQALREFNMRDGRDIKEILQEVDSDNFVAMMRKGNPEAMTKKRRDSLPLT 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00627 534 ProSitePatterns EF-hand calcium-binding domain. 400 412 IPR018247 -
Pste3g00627 534 Pfam EF-hand domain 464 489 IPR002048 GO:0005509
Pste3g00627 534 MobiDBLite consensus disorder prediction 1 78 - -
Pste3g00627 534 Gene3D Transferase(Phosphotransferase) domain 1 172 351 - -
Pste3g00627 534 FunFam Calcium-dependent protein kinase 1 88 171 - -
Pste3g00627 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 77 510 - -
Pste3g00627 534 Pfam EF-hand domain pair 392 452 IPR002048 GO:0005509
Pste3g00627 534 ProSiteProfiles Protein kinase domain profile. 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g00627 534 CDD STKc_CAMK 86 343 - -
Pste3g00627 534 Gene3D - 352 519 - -
Pste3g00627 534 SUPERFAMILY EF-hand 384 515 IPR011992 -
Pste3g00627 534 ProSiteProfiles EF-hand calcium-binding domain profile. 459 494 IPR002048 GO:0005509
Pste3g00627 534 MobiDBLite consensus disorder prediction 1 46 - -
Pste3g00627 534 ProSitePatterns Protein kinases ATP-binding region signature. 92 119 IPR017441 GO:0005524
Pste3g00627 534 ProSiteProfiles EF-hand calcium-binding domain profile. 387 422 IPR002048 GO:0005509
Pste3g00627 534 Gene3D Phosphorylase Kinase; domain 1 88 171 - -
Pste3g00627 534 SMART serkin_6 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g00627 534 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Pste3g00627 534 ProSitePatterns EF-hand calcium-binding domain. 472 484 IPR018247 -
Pste3g00627 534 Pfam Protein kinase domain 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g00627 534 FunFam calcium-dependent protein kinase 1 172 351 - -
Pste3g00627 534 FunFam Calcium-dependent protein kinase 1 352 519 - -
Pste3g00627 534 SMART efh_1 391 419 IPR002048 GO:0005509
Pste3g00627 534 SMART efh_1 427 455 IPR002048 GO:0005509
Pste3g00627 534 SMART efh_1 463 491 IPR002048 GO:0005509
Pste3g00627 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Pste3g00627 534 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Pste3g00627 534 SUPERFAMILY Protein kinase-like (PK-like) 85 349 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00627 Pste-Chr3 3868644 3874508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00627 1 529 EF-hand Containing Proteins AT5G12180 78.212 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pste3g00627 Pkinase 1.2e-75 CL0016