Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00569 ATAGTTGAGGAGCAGAAGATAACGAGTGAGCAGCGAGAGGGAGAGGCAAGGCTTAGGTCCAGCGGAGGACGAGTTGAGATTGGAAAGCAATGTGTTACTCGCTTCAACCGAGTGGAGGATCCTCCCACTTGCCATCGCCGACTTTCGATACGCAACATTGGCGGGAGGGGCATTCACACCAAAGCTGCAAACTTGTTTCTGTACCCAACGAAGCGACTGTTTATCACTCAATCGCCGTCTCAGAATCACCATCTTGGTAGTTCTAAAGAGGAATATTTGCCGGAGCCCAGGAGGCTATGGAATGCTCTTAAACATATTGGACTTCCTCGAATTGCTGAAGATCAAGCCTGTGTAGGAGAGAGAAAAGAAGGGAATATGATATTTGTGTTGTCTTCATATTCAGTGCTCACTTTGAAATCTTCCCTGAGTTCAGTGCCGCTCCCTTTGGCCATGGGAAGAGCTCCATGTTGTGACAAAGCTAACGTCAAAAGAGGGCCTTGGTCTCCTGAAGAAGATGAAACCCTCAAAAATTATCTCAGGAAACATGGCACAGGTGGTAACTGGATAACTCTCCCACAAAAAGCAGGCCTTAAGCGCTGTGGGAAGAGTTGTCGTCTCAGATGGCTGAACTATCTCAGGCCTCATATCAAGCATGGAGGTTTCACTGATGAGGAAGACCAAGTTATCTGCACCCTTTATGCCTCCATTGGAAGCAGGCACCGAATTTTAAAATGCTTTTATTTTGCTTGTTCATCCGTTGTGCCCTTACCTATCATATATATATCTGGTGTTAGGTGGTCCCTTATAGCTGCTCAGCTACCTGGGAGAACAGATAATGATGTGAAAAACCATTGGAACACCAAGTTAAAGAAAAAGTTTTTGGCTATAAAAACCAATGCCGCTGGCAATTCTGTTTGTCCACAGTCCTCGACTTCCATCACTCCTCAGCCTCAAGTTGAAGAGCGTGTCTTTGATCATGAGAACTCATCTGATTCCCGTGTTTTAGGATTGGAGAAAACACCACCAGTTTCAGTTCCTTCGGCATCGCCTTTAGGATCAGATGTTTCAGGTCTTTTCAGCAGTTGTATTGCTCCATTATCCAATGATGTTTTGGTTCTTTCAAATTCAACTTCCTTTGTACGAGAGGAGAATGAGACCAAATGGTTTGGCTATCATGACAACATTGAAGGTGAAGATGAAGCATTTTTGCTTGATTTTATGTATGAAGATCTGCTGCATAATGGGTTTGTTTCACAAGAAAAAAGCAGCCAAGTTGCCCCGTCATTTGGT 1290 0.445 IVEEQKITSEQREGEARLRSSGGRVEIGKQCVTRFNRVEDPPTCHRRLSIRNIGGRGIHTKAANLFLYPTKRLFITQSPSQNHHLGSSKEEYLPEPRRLWNALKHIGLPRIAEDQACVGERKEGNMIFVLSSYSVLTLKSSLSSVPLPLAMGRAPCCDKANVKRGPWSPEEDETLKNYLRKHGTGGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDQVICTLYASIGSRHRILKCFYFACSSVVPLPIIYISGVRWSLIAAQLPGRTDNDVKNHWNTKLKKKFLAIKTNAAGNSVCPQSSTSITPQPQVEERVFDHENSSDSRVLGLEKTPPVSVPSASPLGSDVSGLFSSCIAPLSNDVLVLSNSTSFVREENETKWFGYHDNIEGEDEAFLLDFMYEDLLHNGFVSQEKSSQVAPSFG 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00569 430 ProSiteProfiles Myb-like domain profile. 213 289 IPR001005 -
Pste3g00569 430 ProSiteProfiles Myb-like domain profile. 159 212 IPR001005 -
Pste3g00569 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 216 IPR017930 -
Pste3g00569 430 Gene3D - 157 218 - -
Pste3g00569 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 263 293 IPR017930 -
Pste3g00569 430 MobiDBLite consensus disorder prediction 1 21 - -
Pste3g00569 430 MobiDBLite consensus disorder prediction 329 348 - -
Pste3g00569 430 CDD SANT 265 289 IPR001005 -
Pste3g00569 430 SMART sant 163 214 IPR001005 -
Pste3g00569 430 SMART sant 217 291 IPR001005 -
Pste3g00569 430 Gene3D - 220 292 - -
Pste3g00569 430 FunFam Transcription factor RAX3 157 218 - -
Pste3g00569 430 SUPERFAMILY Homeodomain-like 164 290 IPR009057 -
Pste3g00569 430 PANTHER OS09G0431300 PROTEIN 151 316 - -
Pste3g00569 430 CDD SANT 166 212 IPR001005 -
Pste3g00569 430 Pfam Myb-like DNA-binding domain 221 287 IPR001005 -
Pste3g00569 430 Pfam Myb-like DNA-binding domain 164 212 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00569 Pste-Chr3 3552585 3562865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00569 151 295 MYB Transcription Factor Family AT5G57620 66.897 4.02e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste3g00569 Myb_DNA-binding 2.8e-07 CL0123