Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00565 GGAGGAGCACGTGAGAATGGAGTGGGCGAATGAACATGAACACCTGTTGACGTACGTGGAAGAGAGGGAGGCAAACTGTGAGGCTGTGAGATGGTTTGGAAGAGGGGCGCGAAGGGAGTTTATAAAGGGCCACCAAACCATGAGGCTAAAACATACAAAATCAGGAAATCAGGAAATCAGGAAATCAGGAAGAATGATGTTAGGGCGTGCAAATCCAAGCGTACACGTGCCACCGTGGCCGGAGATATATGAAGGCAAAGGCAAAGGCAAAGGCAATGCAGAATACTGCTGGCAAGAAGCAGTGAACGCACTACAGAACTACGAGTGGACGGAGGCGGAGGGGGAATCGGAGTCGGAGTGGGAGGTTCCGCCCCTGGACGCATACTGGTGTGACCATTTCCGCATGTTTGAGTTCAAGGTTAGGAGATGTGGAAGAGGCCGCTCACATGACTGGACGGAGTGCCCCTACGCTCACCCAGGCGAGAAGGCTAGGCGGCGTGATCCCCGCAAGTATCATTACTCCGGCACCGCCTGTCCCGATTTTCGTAAGGGGACTTGCAGGAAAGGTGACGGGTGTGAGTACGCGCATGGGGTTTTCGAGTGCTGGCTCCACCCTGCCCGCTACCGTACTCAGCCCTGCAAGGACGGTACTAGTTGTCGGCGGCGCGTGTGTTTCTTCGCCCACACCCCTGACCAACTTAGGGTTCTTTCCCCGCTGGACTCTCCCCCCATGTCCCCCCCTATTCATGACGCCCTCGCCTCCCTCATGAACCTCCAACTCGGCGAGGTCAAGTCCTTGCCTTCTCCTTCCTCTTCTTCTTCTTGTAATGTTCTTCTGTCTCCCGTCCTCCCACCCTGTTTCCTTAGCCTTCCCTCCACTCCCACTCCCTCTCCCTCTCCCTCTCGCTCCTCCGCTGTCAACTATTTTGACCTTTGGGATCACTCTTGTGAGGAGGAGCCTGTCATGGAGAGGGTCGAGTCTGGTCGGAACATCCGAGCCATGATTTATAAATGGATTCCAGGTGAATTGGAAGGACCTAGAAATAGAATGCGAGGAGATAAGGGTGTGACAGGCTACAAGGAAAAAAATCCAGGTGTACAAAATGCTCATAAACCGGGTTGGTTTCTGGTTTCTGCCAAATTGCACAAGCAGCACGTATACAGTAAGTATACTGTTGCTGAATCACGC 1189 0.5366 MEWANEHEHLLTYVEEREANCEAVRWFGRGARREFIKGHQTMRLKHTKSGNQEIRKSGRMMLGRANPSVHVPPWPEIYEGKGKGKGNAEYCWQEAVNALQNYEWTEAEGESESEWEVPPLDAYWCDHFRMFEFKVRRCGRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGTCRKGDGCEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPDQLRVLSPLDSPPMSPPIHDALASLMNLQLGEVKSLPSPSSSSSCNVLLSPVLPPCFLSLPSTPTPSPSPSRSSAVNYFDLWDHSCEEEPVMERVESGRNIRAMIYKWIPGELEGPRNRMRGDKGVTGYKEKNPGVQNAHKPGWFLVSAKLHKQHVYSKYTVAESR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00565 391 Gene3D - 167 230 - -
Pste3g00565 391 FunFam Zinc finger CCCH domain-containing protein 66 125 193 - -
Pste3g00565 391 SMART c3hfinal6 202 225 IPR000571 GO:0046872
Pste3g00565 391 SMART c3hfinal6 167 193 IPR000571 GO:0046872
Pste3g00565 391 ProSiteProfiles Zinc finger C3H1-type profile. 168 194 IPR000571 GO:0046872
Pste3g00565 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 172 192 IPR000571 GO:0046872
Pste3g00565 391 PANTHER UNKEMPT FAMILY MEMBER 91 325 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00565 Pste-Chr3 3525578 3527309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00565 123 286 C2H2 Transcription Factor Family AT5G12850 53.049 1.08e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste3g00565 zf-CCCH 0.00029 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00565 3 3525578 3527309 Pste3g00565 3 3525578 3527309 ECH