Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00548 ATGTCAAAAGGTAGCACCATGAATAAGATCAGCAACTTGAGTTGTGTTAGGAGCTCTGATCTCATAGATGCCAAGCTCGAAGAGCATCAACTGTGTGGATCCAAACAGTGTCCCGGTTGTGGTCACAAACTTGAAGGGAAGCCGGACTGGCTAGGTCTACCAGCAGGAGTGAAGTTTGATCCAACTGATCAAGAACTCGTAGAACATCTTGAAGCCAAAGTCGAGGCAAAGAATATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGCTTAAGCAGACACTTCTTCCACAGGCCCTCAAAGGCTTACACAACAGGAACACGAAAGAGAAGAAAGATTCAAAACGAATGCGACTTACAAGGAGGGGAAACCCGATGGCACAAGACAGGTAAGACCAGAGCAGTTATGGTGAATGGCAAACAGAAGGGTTGCAAGAAGATTCTAGTGCTCTACACCAACTTCGGAAAAAACAGAAAACCTGAAAAGACCAACTGGGTGATGCACCAGTACCATCTGGGCCAACACGAGGAAGAGAAAGAGGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACTCAACCAAGGCAATGCAATTGGTCAGATAGAAGTGCCACAACCGGTGAAGGAAGTGGAGATCAACAGCCCAACAATGGAAGAAGAGACAGTGGAAGTGGGAGTTGTTCCTCTAAGGAAATTCTTACTCAAAGAGATGAAATGTCTGCTGTTGTTGGGGTCCCTCCCCTCACAACCTTCAACACTGCCTTGGAGATTCACCAACTCAAATCCGACCATTTTAGCTTCATTCCATTTAGAAAAGGCTTCGATGAGGTTGGAATAGGAGAAGCTTCCAAAGCAAGAGAAATACAAGCATCAGGCTCATGCGAGGAAGTACACGAAGGGCATGTTGCACATCATCAACAACAGCAGGCGCACCAACAAATTGCAACCACTTCCTTCCATATCAGTAGGCCTTCGCATCCCATCTCCACCATCATCTCTCCTCCACCCCTTCACCATGCATCCATCATCTTAGACGACAACTCCTACCATGTCTCCAGAATAATGCTCCAAAATGAAAATTTCCTGCAACAGCAGCAACAACATCATAAACTTGGGGGAAGGTCTTCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCAAATGATATCAAAGAGAAATCATCCATTACAAACCCACAAGAAGTTGAATGGTTGAAATACTCTTCTTACTGGCCTGACCCTGGCAACCTGCACGATCATCATGATTTCTTCAACAAAAAGCCAAGTAATGAGATCCATGGTTTGCTCATTTTCTTTGTTTTTCCAATGGTGCAAGTTTATGATAAGTTTTGGTGGCTCTCAGCGGAATTAACTGTGTGCAACGGAACAGATTGGATCAAAAGGGAAAAGCAAAAATAA 1491 0.446 MSKGSTMNKISNLSCVRSSDLIDAKLEEHQLCGSKQCPGCGHKLEGKPDWLGLPAGVKFDPTDQELVEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRAVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGDQQPNNGRRDSGSGSCSSKEILTQRDEMSAVVGVPPLTTFNTALEIHQLKSDHFSFIPFRKGFDEVGIGEASKAREIQASGSCEEVHEGHVAHHQQQQAHQQIATTSFHISRPSHPISTIISPPPLHHASIILDDNSYHVSRIMLQNENFLQQQQQHHKLGGRSSSGLEELIMGCTSNDIKEKSSITNPQEVEWLKYSSYWPDPGNLHDHHDFFNKKPSNEIHGLLIFFVFPMVQVYDKFWWLSAELTVCNGTDWIKREKQK 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00548 496 MobiDBLite consensus disorder prediction 222 253 - -
Pste3g00548 496 Pfam No apical meristem (NAM) protein 54 195 IPR003441 GO:0003677|GO:0006355
Pste3g00548 496 ProSiteProfiles NAC domain profile. 53 214 IPR003441 GO:0003677|GO:0006355
Pste3g00548 496 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 18 334 IPR044799 GO:0003700
Pste3g00548 496 SUPERFAMILY NAC domain 49 214 IPR036093 GO:0003677|GO:0006355
Pste3g00548 496 Gene3D NAC domain 62 218 IPR036093 GO:0003677|GO:0006355
Pste3g00548 496 FunFam NAC domain-containing protein 73 62 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00548 Pste-Chr3 3391178 3395530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00548 20 435 NAC Transcription Factor Family AT5G56620 54.018 7.75e-137 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste3g00548 NAM 2.3e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00548 3 3391178 3395530 Pste3g00548 3 3391178 3395530 ECH
Pste3g00548 3 3391178 3395530 Pste9g01628 9 16683963 16689867 PCT