Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00539 CACAATACAAGAAGAAACAAACAACAAAATGTCGTGGCAAACATATGTTGACGATCATTTGATGTGTGATATTGATGGCACTGGCCATCACCTCACCGCCGCTGCCATCATTGGACATGATGGTTCAATTTGGGCTCAAAGCTCTTCTTTTCCTCAAATTAAATCTCAAGAGATCTCTGATATCATGAAAGATTTCGACGAACCAGGTCATCTTGCTCCTACAGGTTTGCATCTTGCCGGAACTAAGTACATGGTTATTCAAGGAGAGTCAGGAGCTGTCATCCGTGGGAAGAAGGGATCGGGGGGCATCACCATAAAGAAAACTGGTCAAGCTTTAGTTTTTGGTGTCTATGAGGAACCTGTTACTCCTGGACAATGCAACATGGTTGTTGAGAGGTTGGGAGATTACCTTATTGATCAAGGTCTCTAGACCTAGCTAGATCTATATATCATGTTTGGAGCATTTTTGTTTCTTGGACACTATACTTTGTTATTTTCATATTTTTTACTTGTATCTACCATATCA 526 0.4068 MSWQTYVDDHLMCDIDGTGHHLTAAAIIGHDGSIWAQSSSFPQIKSQEISDIMKDFDEPGHLAPTGLHLAGTKYMVIQGESGAVIRGKKGSGGITIKKTGQALVFGVYEEPVTPGQCNMVVERLGDYLIDQGL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00539 133 CDD PROF 2 132 IPR005455 GO:0003779
Pste3g00539 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Pste3g00539 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Pste3g00539 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Pste3g00539 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Pste3g00539 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Pste3g00539 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Pste3g00539 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Pste3g00539 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Pste3g00539 133 FunFam Profilin 1 133 - -
Pste3g00539 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Pste3g00539 133 SMART prof_2 1 133 IPR005455 GO:0003779
Pste3g00539 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779
Pste3g00539 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Pste3g00539 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Pste3g00539 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Pste3g00539 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Pste3g00539 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Pste3g00539 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Pste3g00539 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Pste3g00539 133 Pfam Profilin 1 132 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00539 Pste-Chr3 3304976 3306407 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00539 1 133 Cytoskeleton Gene Families AT4G29340 84.328 7.08e-85 242