Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00512 CGTGAACTCTCTCTCTGTCATTGATTCTCTGATTCAGCTTCACTCACTTCCCAGTCCCACCTATAAACAAGTACTAATTATTTGTATATAAACCGTGACACAAGCCAATTTACACAGCATTTGTAGTTCCAAACCACATACCCTCCTTATTATTCTTTTGCTCACAATCACATTCTCTCCTAGATGACAAATTTGCATTTTATTTTCTACGGTCTAGTGGTTATTCTTCTTCTACAGAATCCCAGTGCAACACAATGTCATACCAAGGGAATTAGACCTAGGCCCGGAAATGGTTTATCTACCAACATGACCACTGTCCAATTTTCAGAACAACAGTTCATGAAATGGGTGAGATTTGTAGGTGGCCTCAAGCATTCTGTCTTTAGGACAGCAAAGAATAAGCTTTTTCCTTCTCACACGTTACACGTTTCTAAGAAGCCAAGTAAAGGAGGTTTTTCATCCATTCAAGCAGCCATTGATTCCCTTCCATTTATCAATATAGTGAGAGTGGTAATTAAGGTTCAAGCAGGGGTTTACACGGAGAAAGTTAATATTCCTCCTTTGAAATCCTTCATAACAATACAAGGAGCAGGTGCGGATAAAACTATTGTTCAATGGGGTGACACTGCTGAAAGCCAGCCATTAGGAACCTATGGTTCTGCAACTTTTGCAGTGAATTCACCTTATTTCATAGCCAAGAATATCACGTTCAAAAACACTGCCCCGATTCCAGCACCTGGAGCCGTCGGAAAGCAGGCAGTGGCATTGAGAATTTCAGCAGATACAGCAGTATTCCTAGGCTGCAAATTCTTAGGAGCACAGGATACACTCTATGATCATGTGGGTAGGCATTATTATAAGGATTGCTATATTGAAGGCTCTGTTGATTTCATATTTGGCAATGCTCTCTCTCTCTTTGAGGGATGTCACGTGCATGCCATAGCACAACTTACAGGGGCACTAACAGCCCAAGGAAGGAGCAGCTTATTAGAAGACACGGGTTTCTCGTTTGTTCACTGTAAGGTCACGGGCTCAGGGGCACTTTACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTTGTCTTTGCTTTCACTTACATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGCGACCCTAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTACGCGGGGAGAGTATCATGGTCAAGGGAACTCACTGACGAGGAAGCCAAGCCTTTTATTTCACTTAGCTATATTGATGGCTCTGAATGGATAAGTCTTTCTATTTGATTTTCATTTCAGACTTCTCACAAAATTTCATTCTATTTATCTCATTATAAAATTTTTATGTATAAAT 1378 0.4151 MTNLHFIFYGLVVILLLQNPSATQCHTKGIRPRPGNGLSTNMTTVQFSEQQFMKWVRFVGGLKHSVFRTAKNKLFPSHTLHVSKKPSKGGFSSIQAAIDSLPFINIVRVVIKVQAGVYTEKVNIPPLKSFITIQGAGADKTIVQWGDTAESQPLGTYGSATFAVNSPYFIAKNITFKNTAPIPAPGAVGKQAVALRISADTAVFLGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQLTGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAFTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWISLSI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00512 375 SUPERFAMILY Pectin lyase-like 76 373 IPR011050 -
Pste3g00512 375 Gene3D - 76 374 IPR012334 -
Pste3g00512 375 FunFam Pectinesterase 76 373 - -
Pste3g00512 375 Pfam Pectinesterase 86 367 IPR000070 GO:0030599|GO:0042545
Pste3g00512 375 ProSitePatterns Pectinesterase signature 2. 230 239 IPR033131 -
Pste3g00512 375 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 73 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00512 Pste-Chr3 3056887 3059830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00512 91 374 Carbohydrate Esterase AT1G05310 49.315 1.99e-100 301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00512 3 3056887 3059830 Pste3g00512 3 3056887 3059830 ECH