Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00509 ATGGGGCGAGGGAAGATCGAGATCAAGAGAATCGACAATGCCAGCAGCAGACAGGTCACGTTTTCCAAACGCAGAACTGGATTGTTCAAGAAGGCTCAGGAGCTTTCCATCCTCTGTGACGCTGAAGTTGCTGTCATAGTCTTCTCCAACACTGGCAAGCTCTTCGAGTTTTCCAGTTCCGGTATGAAGCGAACACTTTCAAGATACAATAAATGCCTTGGTTCTACAGATGCTGTTGTAGCAGAAATTAATAAGACACAGAGGGAAGATTCTAAGATCGTGGACATTCTAAGAGAGGAAATTGCACAGCTAGAAACAAAGCAATTGTATTTATTGGGGAAGGATCTGACAGGATTGAGTTTAAAAGAATTGCAAAATTTAGAACAGCAACTTAATGAGGGGTTATTGTCTGTCAAGTCAAAAAAGGAGGAATTACTCATGGAGCAACTGGATCAATCTAGAGTTCAGATTGAGGAGCTTCGTTGTCTGTTTCCACAATCAGAAGCTGTGGTCCCATTTCAATTGCCAAATACTGAAAGAAAGAATACTTTTGTAAATACTGGTGCCAGATGTCTCAACTTGAGCAATAACTGTGGAAACGAGAAAGGAAGTTCAGACACAGCATTTCATTTGGGGTTGCCTGCTGGTGTTCAAGAGGAGGGGCCCCAAGAAAGAAACCTTTTCAAATGA 690 0.4217 MGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDAEVAVIVFSNTGKLFEFSSSGMKRTLSRYNKCLGSTDAVVAEINKTQREDSKIVDILREEIAQLETKQLYLLGKDLTGLSLKELQNLEQQLNEGLLSVKSKKEELLMEQLDQSRVQIEELRCLFPQSEAVVPFQLPNTERKNTFVNTGARCLNLSNNCGNEKGSSDTAFHLGLPAGVQEEGPQERNLFK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00509 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste3g00509 229 ProSiteProfiles K-box domain profile. 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste3g00509 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste3g00509 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste3g00509 229 Coils Coil 124 144 - -
Pste3g00509 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste3g00509 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste3g00509 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste3g00509 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Pste3g00509 229 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pste3g00509 229 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Pste3g00509 229 Pfam K-box region 91 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste3g00509 229 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Pste3g00509 229 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pste3g00509 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00509 Pste-Chr3 3002973 3011093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00509 1 219 MADS-box Gene Family AT5G13790 48.085 1.69e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste3g00509 K-box 7.7e-14 No_clan