Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00481 ATGGGTCGTCGTAAGATAGAGATTACAGAGGTGAAGGACCCCAACACCAAGCAAGTTACATTTTCTAAGCGTCGAACAGGTTTGTTTAAAAAGGCAAACGAATTATCTATTTTGTGTAAAGCAGAAGTTGCTATTGTGGTGTTCTCCCCTGGGAACAAGCCATACTCTTTTGGGCACCCAAGTGTTGATGTTGTTGCAGAAAAATTTCTTCAATATCCTAAATCCAATGTTGCCAAATCAAATGATGTCCAAGGAAATATCCCATCTGATGACATTGGTAACATGGATAGCCTGAATCTACAATTGTCTCAACTTCAAGCTCAACTGCGGGAGGAACAAAAAAAGGCTGGGGAACTTGACAAGAGATTGAAACAACAACACTCTCAAAATTTGGAGTGTCAACATAATGCCAAGGATTATTTTGATGCAATCCAGTGGTCCAACCAGAGGGTGATGCAGTTTGAATGGTACACGTGGCCGCACGGTACTCGTTTGTTTTCCCCATCCGTGTTGGGGTTGGGGTGGATAAAGCTTTCCATGCAAACAGAGCAAACATCGTCTCCCGTCACGTCGTTAACCGTCGGTAAGTTCGATACGAAGTTCTTCCACGACGCTAATGGACGCCGTGAATCTCCGTCCACCACCGCTAGCGCCTCGTCCAGATCAAAATCTATCAACATTAACGCCCACGACATCGGCATCATCGCATTATTGTTGCTTTCTGAAACCGTAAGTCTTTCTTTTCAGTTAGTTGAACATGACCACTCCGAGGATTAG 777 0.4414 MGRRKIEITEVKDPNTKQVTFSKRRTGLFKKANELSILCKAEVAIVVFSPGNKPYSFGHPSVDVVAEKFLQYPKSNVAKSNDVQGNIPSDDIGNMDSLNLQLSQLQAQLREEQKKAGELDKRLKQQHSQNLECQHNAKDYFDAIQWSNQRVMQFEWYTWPHGTRLFSPSVLGLGWIKLSMQTEQTSSPVTSLTVGKFDTKFFHDANGRRESPSTTASASSRSKSININAHDIGIIALLLLSETVSLSFQLVEHDHSED 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00481 258 PANTHER MADS BOX PROTEIN 3 125 - -
Pste3g00481 258 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pste3g00481 258 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste3g00481 258 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Pste3g00481 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Pste3g00481 258 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Pste3g00481 258 Coils Coil 95 129 - -
Pste3g00481 258 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste3g00481 258 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste3g00481 258 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste3g00481 258 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Pste3g00481 258 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00481 Pste-Chr3 2757091 2760593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00481 1 69 Type I MADS-box Gene Family AT3G66656 75.362 8.01e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste3g00481 SRF-TF 1.2e-23 No_clan