Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00480 ATGGAAATAGACTCATACCATGATGGCTCCTCCTCCCAACACCATGATCCATCACCACTACCACCTACCCTCGCCAACCATTCTTGGCAAAATCTCCCCTTTCCCAAGAAGACACGTGGCAGGCCCGCAGGCTCCAAAAACAAGCCAAAGTCCACCTTCTTCAGAATGGAACCCAACCTTTCCAATCCCTCTTCAAATATCATTGAGATAAACATAACTCCAGGTAAGGACATCATTGAGACCATCCTTGACGCTGCTCGTCAAAGTCATTACAGTTTTACTATCCTCAGTGCCTATGGCATGATCACCAATGTGAACCTTCACACCTCGCCCAATAGTGCAGCCCTAACGCCTCCGGGGCCATACACATTGCTCTCCTTAACTGGCTCATACATATACAAAAACCAATATAAACTTCACCTTGGAGCCACCTCTCCCCCTCCCTTGTACTTTGGAATCAACCTTTGCACCTCCCAAGGCCAAGTGTTTGGTGGCCCCATTGTCGGCTCAGTTGTTGCAGGTGAGAATGTCAGCTTAATGGTTTCAACCTTTAGGTATCCTATGATTTACAAGCATCTCCCTCAATGTAGAGATGGAGACAACCTTGACAACAATGACAGCCATTAA 627 0.4705 MEIDSYHDGSSSQHHDPSPLPPTLANHSWQNLPFPKKTRGRPAGSKNKPKSTFFRMEPNLSNPSSNIIEINITPGKDIIETILDAARQSHYSFTILSAYGMITNVNLHTSPNSAALTPPGPYTLLSLTGSYIYKNQYKLHLGATSPPPLYFGINLCTSQGQVFGGPIVGSVVAGENVSLMVSTFRYPMIYKHLPQCRDGDNLDNNDSH 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00480 208 MobiDBLite consensus disorder prediction 1 58 - -
Pste3g00480 208 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 23 196 IPR014476 GO:0003680
Pste3g00480 208 Pfam Plants and Prokaryotes Conserved (PCC) domain 70 184 IPR005175 -
Pste3g00480 208 CDD DUF296 70 184 IPR005175 -
Pste3g00480 208 SUPERFAMILY AF0104/ALDC/Ptd012-like 66 187 - -
Pste3g00480 208 Gene3D - 66 195 - -
Pste3g00480 208 ProSiteProfiles PPC domain profile profile. 61 205 IPR005175 -
Pste3g00480 208 MobiDBLite consensus disorder prediction 12 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00480 Pste-Chr3 2746812 2747438 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00480 36 184 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 30.201 2.56e-16 73.6