Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste3g00450 | GGAGGTTCTGGCTTTGCTACAAACATCAAATTTGTGGATATAACAATGAAAAATGTGACGAATCCCATAATTGTAAATCAAAATTATTGTGACCAGAAGAATCCATGCCACGAGAAGGAATCAGCAGTGCAATTGAGCAACATTAGGTACCAAAACATAAGAGGAACAAGTGCTTCAGAAGTGGCAATTAAATTTGACTGCAGCAGAACTGTTCCATGCAAAGAAGTATACTTAGAAGATGTGATTTTAACACCAGCACAACATGCTGCCAGTGGCACCATTGCTACATGTGAAAAT | 297 | 0.3838 | GGSGFATNIKFVDITMKNVTNPIIVNQNYCDQKNPCHEKESAVQLSNIRYQNIRGTSASEVAIKFDCSRTVPCKEVYLEDVILTPAQHAASGTIATCEN | 99 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste3g00450 | 99 | Pfam | Glycosyl hydrolases family 28 | 2 | 88 | IPR000743 | GO:0004650|GO:0005975 | |
| Pste3g00450 | 99 | PANTHER | - | 2 | 97 | - | - | |
| Pste3g00450 | 99 | SUPERFAMILY | Pectin lyase-like | 1 | 97 | IPR011050 | - | |
| Pste3g00450 | 99 | Gene3D | - | 1 | 99 | IPR012334 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste3g00450 | Pste-Chr3 | 2586211 | 2587351 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste3g00450 | 1 | 99 | Glycoside Hydrolase | AT3G07970 | 50.505 | 1.66e-28 | 104 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pste3g00450 | 3 | 2586211 | 2587351 | Pste3g00450 | 3 | 2586211 | 2587351 | ECH | |
| Pste1g00592 | 1 | 1940197 | 1941042 | Pste3g00450 | 3 | 2586211 | 2587351 | PCT | |
| Pste1g04349 | 1 | 28974639 | 28976261 | Pste3g00450 | 3 | 2586211 | 2587351 | PCT |