Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00423 GCGGAAACAGTTCCGCAATTTCTTTTGCATACCACATCCTCGTTCTTTGTTTAATGTTACCATTTGCATTCAATGCAATTAGCTAACACTACATAACAGCAGATAGAAAAGTTCCATTCACTTGTTAACTAACACATATATTCTCTCTGTTTCTTGATTTGTGTTGTGATGTCTGAGACATTGGAAGAGGTTCCTTCAATGAAAGGAGGGTTGAACCTGAAGGCCACTGAGCTGAGGCTCGGGTTGCCAGGGTGTGAGTCACCGGAGAGGGAGGGTGTGTTTAAGAGTGTGGTGGTGTCTGGGGCCAAGAGGGGCTTCTCCGATGCCATTCATGTGGGTTCTGAGAACTGGAATGGTGGATCTGAACTGGCTTTTGGAAAAGATGCTGCCTTGTTCTCTCCCACGGCTACTGTTAGTGCTGCTAACTCTCTCACTCTCACTGCAACAGATCAAACTGTTCCACACTCTCCAAAATCATTGCATGAGAAAATGCCCCACATTTCTGCTCCAGCTGCAAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTTCTCAGCCTCATAAGAATGATGCCGCTGCTGATGCAGAAGCAAAGTCTGGATGCCTTTATGTAAAAGTCAGCATGGAAGGCGCCCCATACTTGAGGAAAGTGGATCTGAATAGTTTTACCACTTACAAGGAACTCTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACACTCAGTCAATGTGGTTCTTATGGGGTTTCTAGTCGAGAAAATTTAAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTTACTTATGAAGACAAGGATGGCGATTGGATGCTAGTTGGTGATGTTCCGTGGGAGTAAGTGCATTTATAGGAGAGTGTTTAGGATTTTAACTAATGTGATAGTTAGACATTATATTTTCTTAAAAATACCATTTCAGGGATACATATCCGAAATGATCTTATTATTCTTTTAGGATGTTCATTGAATCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGAGCCATGGAAAAGTGCAGAAGTCGCAACTAGTGCAATGCTATATGCTTTTTGTCTTTTGATCCGGAAAGATGAAGATCACAATATTTAAGCATATAATACCTTATTTCTTATACGAGATTGGGGTGTCCAAAACATTTTAGTGGGCAAGATATATTGATGACAACATATTAGGTTTGTTGTAGCCGTCTATATCATTTTGATGTAGACGTTTAAGGTTTTAGTTTCTCCCACACTTCAATTACAGTCCTTTAGGCTTACCGCGTAGTATGTAAATTTTCATTTCTCCAGTAACTTATCTGCCCTCTATGTAAGCGAGCATTTTGTTTGTCATGGCAACCTAAGAGCATCATACTTTCTTTATATGTCTCCACTCTTATATTGTAAAGTTAAATATTTGTTTTTAAATAGGAGTATTTTAAAAATGATTTCCATTCTCG 1516 0.4004 MSETLEEVPSMKGGLNLKATELRLGLPGCESPEREGVFKSVVVSGAKRGFSDAIHVGSENWNGGSELAFGKDAALFSPTATVSAANSLTLTATDQTVPHSPKSLHEKMPHISAPAAKAQVVGWPPIRSFRKNSMASQPHKNDAAADAEAKSGCLYVKVSMEGAPYLRKVDLNSFTTYKELSLALEKMFSCFTLSQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWE 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00423 241 Pfam AUX/IAA family 20 241 IPR033389 -
Pste3g00423 241 ProSiteProfiles PB1 domain profile. 153 241 IPR000270 GO:0005515
Pste3g00423 241 SUPERFAMILY CAD & PB1 domains 151 241 - -
Pste3g00423 241 Gene3D - 147 241 - -
Pste3g00423 241 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 240 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00423 Pste-Chr3 2442790 2445974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00423 127 241 B3 DNA Binding Superfamily AT5G62000 28.696 3.30e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste3g00423 AUX_IAA 1e-68 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00423 3 2442790 2445974 Pste9g01573 9 15943917 15946612 PCT